Browse Element(s) Details


OsAffx.24921.1.S1_s_at

Description tigr:9630.m05822
TID=OsAffx.24921.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5831011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58240Os.35344.3.S1_x_at9/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58240Os.35344.18.S1_x_at9/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58240OsAffx.22940.5.S1_x_at3/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58250OsAffx.12689.1.S1_s_at11/112+35650923..35654663expressed protein
LOC_Os02g58260Os.4723.1.S1_a_at11/112+35654789..35657708metallo-beta-lactamase family protein, putative, expressed
LOC_Os02g58270Os.23550.1.S2_at5/112+35659297..35661622metallo-beta-lactamase family protein, putative, expressed
LOC_Os02g58280Os.23550.1.S1_at9/112+35662131..35665757expressed protein
LOC_Os02g58290NANA2+35667046..35667417expressed protein
LOC_Os02g58300OsAffx.3101.1.S1_at11/112+35668931..35670484membrane-associated salt-inducible protein, putative, expressed
LOC_Os02g58310OsAffx.24921.1.S1_s_at11/112+35671112..35672185expressed protein
LOC_Os02g58320Os.17922.1.S1_at6/112+35673952..35675461BRICK1, putative, expressed
LOC_Os02g58320Os.13504.1.S1_s_at1/112+35673952..35675461BRICK1, putative, expressed
LOC_Os02g58330Os.54091.1.S1_at11/112+35675760..35677669pentatricopeptide, putative, expressed
LOC_Os02g58340Os.7317.1.S1_a_at11/112+35677642..35682603Peptidase family M3 containing protein, expressed
LOC_Os02g58350OsAffx.24922.1.S1_at11/112+35683378..35684521Two-component response regulator ARR3, putative, expressed
LOC_Os02g58360OsAffx.24923.1.S1_at11/112+35687740..35693548expressed protein
LOC_Os02g58370OsAffx.12690.1.S1_at11/112+35694546..35696195hypothetical protein
LOC_Os02g58380OsAffx.3102.1.S1_at11/112+35696788..35697622hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24921.1.S1_s_at--668--7591Chr02:35671663..35671687 (25 bp)
GGGCAGATACATAGCATATGGCAGC
LOC_Os02g58310
OsAffx.24921.1.S1_s_at--847--10011Chr02:35671652..35671676 (25 bp)
TAGCATATGGCAGCGACGACAAGGA
LOC_Os02g58310
OsAffx.24921.1.S1_s_at--598--7371Chr02:35671555..35671579 (25 bp)
GTGGTGGCGGTTATCCGGGCCGTGG
LOC_Os02g58310
OsAffx.24921.1.S1_s_at--386--8651Chr02:35671533..35671557 (25 bp)
TGGGCGACGGCGCAGGTGAATCGAC
LOC_Os02g58310
OsAffx.24921.1.S1_s_at--800--8591Chr02:35671449..35671473 (25 bp)
TGGGTGGACCGGAGGACGCGACGTT
LOC_Os02g58310
OsAffx.24921.1.S1_s_at--331--4271Chr02:35671412..35671436 (25 bp)
CCTGGCGGCGCTGATAAGGAGCAAG
LOC_Os02g58310
OsAffx.24921.1.S1_s_at--919--4091Chr02:35671373..35671397 (25 bp)
CGACGTGACGCTGATAAAGAAGGAG
LOC_Os02g58310
OsAffx.24921.1.S1_s_at--85--8351Chr02:35671341..35671365 (25 bp)
GGCGGAACCTGCTGGCCATGAACGT
LOC_Os02g58310
OsAffx.24921.1.S1_s_at--848--3511Chr02:35671325..35671349 (25 bp)
CATGAACGTCATGTGGAAGTACCGG
LOC_Os02g58310
OsAffx.24921.1.S1_s_at--85--5331Chr02:35671310..35671334 (25 bp)
GAAGTACCGGGAGCAGCGGTCCTTC
LOC_Os02g58310
OsAffx.24921.1.S1_s_at--722--1511Chr02:35671299..35671323 (25 bp)
AGCAGCGGTCCTTCCCGCTGACGGA
LOC_Os02g58310
Target Sequence 
GGGCAGATACATAGCATATGGCAGCGACGACAAGGAGGTGAGAGTAGAGGGAGATATGTGGTGATGAGCAGCGGCAGCGT
CAGGAAGAGCAGCAGCAGCAGGAGGAGGGTGGTGGCGGTTATCCGGGCCGTGGGCGACGGCGCAGGTGAATCGACGAGCG
GCAAGGACGAGGAGGAGGAGGAGAAGAGGCGTCGGGAGGAGCTGGAGCGGTTGGTGGGTGGACCGGAGGACGCGACGTTC
AGCGGGGCGGACCTGGCGGCGCTGATAAGGAGCAAGTACGGGAGGTCGTACGACGTGACGCTGATAAAGAAGGAGTTCAT
GGGGCGGAACCTGCTGGCCATGAACGTCATGTGGAAGTACCGGGAGCAGCGGTCCTTCCCGCTGACGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24921.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis