Browse Element(s) Details


OsAffx.12690.1.S1_at

Description tigr:9630.m05828
TID=OsAffx.12690.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5837011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58300OsAffx.3101.1.S1_at11/112+35668931..35670484membrane-associated salt-inducible protein, putative, expressed
LOC_Os02g58310OsAffx.24921.1.S1_s_at11/112+35671112..35672185expressed protein
LOC_Os02g58320Os.17922.1.S1_at6/112+35673952..35675461BRICK1, putative, expressed
LOC_Os02g58320Os.13504.1.S1_s_at1/112+35673952..35675461BRICK1, putative, expressed
LOC_Os02g58330Os.54091.1.S1_at11/112+35675760..35677669pentatricopeptide, putative, expressed
LOC_Os02g58340Os.7317.1.S1_a_at11/112+35677642..35682603Peptidase family M3 containing protein, expressed
LOC_Os02g58350OsAffx.24922.1.S1_at11/112+35683378..35684521Two-component response regulator ARR3, putative, expressed
LOC_Os02g58360OsAffx.24923.1.S1_at11/112+35687740..35693548expressed protein
LOC_Os02g58370OsAffx.12690.1.S1_at11/112+35694546..35696195hypothetical protein
LOC_Os02g58380OsAffx.3102.1.S1_at11/112+35696788..35697622hypothetical protein
LOC_Os02g58390Os.6800.1.S1_x_at11/112+35699844..35704819Protein kinase domain containing protein, expressed
LOC_Os02g58400OsAffx.12691.1.S1_at9/112+35706934..35708962hypothetical protein
LOC_Os02g58410Os.27842.1.S1_at11/112+35712181..35724680expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12690.1.S1_at--532--7771Chr02:35695387..35695411 (25 bp)
GGTAACCCCTGGCAGCTTGGCCTAC
LOC_Os02g58370
OsAffx.12690.1.S1_at--735--8451Chr02:35695370..35695394 (25 bp)
TGGCCTACCTGGGACCATGGGCATC
LOC_Os02g58370
OsAffx.12690.1.S1_at--1045--6191Chr02:35695270..35695294 (25 bp)
GAGGAATTCTGCCTTGTCAGTCGCA
LOC_Os02g58370
OsAffx.12690.1.S1_at--923--10811Chr02:35695257..35695281 (25 bp)
TTGTCAGTCGCAAGCTACGCTGCTA
LOC_Os02g58370
OsAffx.12690.1.S1_at--821--2411Chr02:35695213..35695237 (25 bp)
AAAAAATGCCTACCTGCTGCCTACC
LOC_Os02g58370
OsAffx.12690.1.S1_at--729--3711Chr02:35695189..35695213 (25 bp)
CTAGCTACCGTACGACTACTTGTGA
LOC_Os02g58370
OsAffx.12690.1.S1_at--705--9911Chr02:35695179..35695203 (25 bp)
TACGACTACTTGTGACTGTTGGAGC
LOC_Os02g58370
OsAffx.12690.1.S1_at--49--5991Chr02:35694880..35694904 (25 bp)
GAGAAATCCCCGTTGTGCCCACAAA
LOC_Os02g58370
OsAffx.12690.1.S1_at--387--10831Chr02:35694868..35694892 (25 bp)
TTGTGCCCACAAAAATTCTTCTCCC
LOC_Os02g58370
OsAffx.12690.1.S1_at--199--5391Chr02:35694751..35694775 (25 bp)
GAAGCAAAATCATCCGGGCGGCGGC
LOC_Os02g58370
OsAffx.12690.1.S1_at--303--9171Chr02:35694657..35694681 (25 bp)
TGCCGCAAAGAACCCGGATCTACTC
LOC_Os02g58370
Target Sequence 
GGTAACCCCTGGCAGCTTGGCCTACCTGGGACCATGGGCATCCAGCACGACCACCGCCGTGTGCCCACGCGCTTTGCCCT
CTTGCTCATCGCCGTCCAACTCCAGCGAGATGATAAGGAGGAATTCTGCCTTGTCAGTCGCAAGCTACGCTGCTACGACT
TGCCCGCCAATGCAAAAAAATGCCTACCTGCTGCCTACCTAGCTACCGTACGACTACTTGTGACTGTTGGAGCTGAGGGG
GGAGAAATCCCCGTTGTGCCCACAAAAATTCTTCTCCCGCCACAACCATTCTTCCTCCCACCACCGAGCCAAGAAAAGAC
AAGAAAATCTTGGGGATTGAAAGAGAAGAAAAATCATCAAGAAAAGTCAAGAAGCAAAATCATCCGGGCGGCGGCGAGGC
CAGTGGTGGTGACCGACGCCGCGGCGGCAACCGGGGACGCCTCCCGCCACCGAGAACCTGCCGCTGCCGCAAAGAACCCG
GATCTACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12690.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis