Browse Element(s) Details


Os.6800.1.S1_x_at

Description gb:AK101172.1
DB_XREF= gi:32986381
TID=Os.6800.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6800 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033028O18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033028O18, full insert sequence.
FL= gb:AK101172.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5839011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58320Os.17922.1.S1_at6/112+35673952..35675461BRICK1, putative, expressed
LOC_Os02g58320Os.13504.1.S1_s_at1/112+35673952..35675461BRICK1, putative, expressed
LOC_Os02g58330Os.54091.1.S1_at11/112+35675760..35677669pentatricopeptide, putative, expressed
LOC_Os02g58340Os.7317.1.S1_a_at11/112+35677642..35682603Peptidase family M3 containing protein, expressed
LOC_Os02g58350OsAffx.24922.1.S1_at11/112+35683378..35684521Two-component response regulator ARR3, putative, expressed
LOC_Os02g58360OsAffx.24923.1.S1_at11/112+35687740..35693548expressed protein
LOC_Os02g58370OsAffx.12690.1.S1_at11/112+35694546..35696195hypothetical protein
LOC_Os02g58380OsAffx.3102.1.S1_at11/112+35696788..35697622hypothetical protein
LOC_Os02g58390Os.6800.1.S1_x_at11/112+35699844..35704819Protein kinase domain containing protein, expressed
LOC_Os02g58400OsAffx.12691.1.S1_at9/112+35706934..35708962hypothetical protein
LOC_Os02g58410Os.27842.1.S1_at11/112+35712181..35724680expressed protein
LOC_Os02g58420NANA2+35725387..35725647hypothetical protein
LOC_Os02g58430OsAffx.13097.1.S1_s_at11/112+35726314..35731898transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6800.1.S1_x_at--150--4751Chr02:35700394..35700418 (25 bp)
GCTGATCAGCATTGCGGCGGCCTGC
LOC_Os02g58390
Os.6800.1.S1_x_at--61--3251Chr02:35700344..35700368 (25 bp)
CAACCACACCGGAGGTGCTACGGAT
LOC_Os02g58390
Os.6800.1.S1_x_at--1158--3191Chr02:35700296..35700320 (25 bp)
CAATGTCGTCGTCGAACAGCAGCGA
LOC_Os02g58390
Os.6800.1.S1_x_at--105--4491Chr02:35700125..35700149 (25 bp)
GCCGGCTTGTTGTTACTTTACTTCA
LOC_Os02g58390
Os.6800.1.S1_x_at--419--9891Chr02:35700112..35700136 (25 bp)
TACTTTACTTCATGTACCGTAGCAG
LOC_Os02g58390
Os.6800.1.S1_x_at--84--6791Chr02:35700074..35700098 (25 bp)
GTTACCACTCAATTTGTCTTGGCTC
LOC_Os02g58390
Os.6800.1.S1_x_at--340--5711Chr02:35700042..35700066 (25 bp)
GACTCATTCTTCAGGCAACACTTTT
LOC_Os02g58390
Os.6800.1.S1_x_at--956--7571Chr02:35699961..35699985 (25 bp)
GGGCATTGGGAGATACTCCTAGCTT
LOC_Os02g58390
Os.6800.1.S1_x_at--93--1311Chr02:35699924..35699948 (25 bp)
AGATGAAGATTCTCTGGGCTGGATC
LOC_Os02g58390
Os.6800.1.S1_x_at--1122--7571Chr02:35699909..35699933 (25 bp)
GGGCTGGATCTGTCTGTAAATCTTT
LOC_Os02g58390
Os.6800.1.S1_x_at--502--10651Chr02:35699851..35699875 (25 bp)
TTCCGGAGTGGAGCTAAACTGGTTT
LOC_Os02g58390
Target Sequence 
GCTGATCAGCATTGCGGCGGCCTGCGTGGTGGCGGACCCGGCGAGGCGGCCAACCACACCGGAGGTGCTACGGATGGTGA
GGGAGGCAAGGGCGGAGGCAATGTCGTCGTCGAACAGCAGCGACCGGTCACCAGCGCGGTGGTCAGACGCCGTGCAGGTG
CAGATGGNCATGGGGGTNCCGCNGAGATCAGGGAGAGCTANGGAGGACTCACCTGANTCGANTCGATCAGCANGCTNGAN
TCTNCATCCTGATCANGCANGCTGATCANTCGCCTGGCTNGGCCGGCTTGTTGTTACTTTACTTCATGTACCGTAGCAGC
AAAAAAAGTGTAGTTACCACTCAATTTGTCTTGGCTCAAAGAATGACTCATTCTTCAGGCAACACTTTTTAAATACCAGG
GGTCTTTGATTTGGGACTTGTGTAGGTTTTTAGCAGGGAAGGGTGGGGCATTGGGAGATACTCCTAGCTTAGATAGGTTC
AGAGATGAAGATTCTCTGGGCTGGATCTGTCTGTAAATCTTTTTTGGATTGTTGTAAACTTGTCCTTTTTATTTTTTCCG
GAGTGGAGCTAAACTGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6800.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis