Browse Element(s) Details


Os.7317.1.S1_a_at

Description gb:AK065077.1
DB_XREF= gi:32975095
TID=Os.7317.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.7317 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0470A12.43 (P0470A12.43), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001K16, full insert sequence.
FL= gb:AK103668.1 gb:AK070094.1 gb:AK065077.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5834011/11Peptidase family M3 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58250OsAffx.12689.1.S1_s_at11/112+35650923..35654663expressed protein
LOC_Os02g58260Os.4723.1.S1_a_at11/112+35654789..35657708metallo-beta-lactamase family protein, putative, expressed
LOC_Os02g58270Os.23550.1.S2_at5/112+35659297..35661622metallo-beta-lactamase family protein, putative, expressed
LOC_Os02g58280Os.23550.1.S1_at9/112+35662131..35665757expressed protein
LOC_Os02g58290NANA2+35667046..35667417expressed protein
LOC_Os02g58300OsAffx.3101.1.S1_at11/112+35668931..35670484membrane-associated salt-inducible protein, putative, expressed
LOC_Os02g58310OsAffx.24921.1.S1_s_at11/112+35671112..35672185expressed protein
LOC_Os02g58320Os.17922.1.S1_at6/112+35673952..35675461BRICK1, putative, expressed
LOC_Os02g58320Os.13504.1.S1_s_at1/112+35673952..35675461BRICK1, putative, expressed
LOC_Os02g58330Os.54091.1.S1_at11/112+35675760..35677669pentatricopeptide, putative, expressed
LOC_Os02g58340Os.7317.1.S1_a_at11/112+35677642..35682603Peptidase family M3 containing protein, expressed
LOC_Os02g58350OsAffx.24922.1.S1_at11/112+35683378..35684521Two-component response regulator ARR3, putative, expressed
LOC_Os02g58360OsAffx.24923.1.S1_at11/112+35687740..35693548expressed protein
LOC_Os02g58370OsAffx.12690.1.S1_at11/112+35694546..35696195hypothetical protein
LOC_Os02g58380OsAffx.3102.1.S1_at11/112+35696788..35697622hypothetical protein
LOC_Os02g58390Os.6800.1.S1_x_at11/112+35699844..35704819Protein kinase domain containing protein, expressed
LOC_Os02g58400OsAffx.12691.1.S1_at9/112+35706934..35708962hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004222molecular_functionmetalloendopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7317.1.S1_a_at--996--1851Chr02:35678681..35678705 (25 bp)
ACGACTTACGATCCAAATGGTTCAT
LOC_Os02g58340
Os.7317.1.S1_a_at--656--6271Chr02:35678645..35678669 (25 bp)
GATGTCGACCGAAGAGTTGCTGAGC
LOC_Os02g58340
Os.7317.1.S1_a_at--953--6671Chr02:35678630..35678654 (25 bp)
GTTGCTGAGCGAACACAGGTTCTTG
LOC_Os02g58340
Os.7317.1.S1_a_at--448--9851Chr02:35678589..35678613 (25 bp)
TAAATTCCTGTGCAGCTTTAGCCAT
LOC_Os02g58340
Os.7317.1.S1_a_at--624--8011Chr02:35678472..35678496 (25 bp)
GGAGGCTATGCAGCTGGATACTACA
LOC_Os02g58340
Os.7317.1.S1_a_at--53--1211Chr02:35678346..35678370 (25 bp)
AGTATTGTCAGCTGATGCATTCTCA
LOC_Os02g58340
Os.7317.1.S1_a_at--289--9071Chr02:35678331..35678355 (25 bp)
TGCATTCTCAGCATTTGAAGACGTT
LOC_Os02g58340
Os.7317.1.S1_a_at--569--2271Chr02:35677896..35678057 (25 bp)
AAATCTCCACTCGAGGTGTTTGTGT
LOC_Os02g58340
Os.7317.1.S1_a_at--881--7131Chr02:35677873..35677897 (25 bp)
GTCTTTCCGCGGACGGGAGCCATCA
LOC_Os02g58340
Os.7317.1.S1_a_at--538--391Chr02:35677852..35677876 (25 bp)
ATCACCGGAAGCTCTGCTCAGGCAC
LOC_Os02g58340
Os.7317.1.S1_a_at--914--4851Chr02:35677819..35677843 (25 bp)
GCTACCTGTTGCTGCATTGTGATAA
LOC_Os02g58340
Target Sequence 
ACGACTTACGATCCAAATGGTTCATTGTCCATATATGATGTCGACCGAAGAGTTGCTGAGCGAACACAGGTTCTTGCTCC
TCTTCCGGAGGATAAATTCCTGTGCAGCTTTAGCCATATATTTGCAGGAGGCTATGCAGCTGGATACTACAGTTACAAGT
GGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGGCAATTGAGGAAACT
GGCAGACGATTCAGAGAAACNGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGGTGTTTGTGTCTTTCCGCGGACG
GGAGCCATCACCGGAAGCTCTGCTCAGGCACAACGGCTTGCTACCTGTTGCTGCATTGTGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7317.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis