Browse Element(s) Details


Os.23550.1.S2_at

Description gb:AK065885.1
DB_XREF= gi:32975903
TID=Os.23550.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23550 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023013J02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013045A06, full insert sequence.
FL= gb:AK069290.1 gb:AK065885.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g582705/11metallo-beta-lactamase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58220Os.7052.1.S1_at10/112+35633876..35636693OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os02g58230Os.26956.1.S1_at11/112+35637135..35642039C2 domain containing protein, expressed
LOC_Os02g58240Os.35344.3.S1_x_at9/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58240Os.35344.18.S1_x_at9/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58240OsAffx.22940.5.S1_x_at3/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58250OsAffx.12689.1.S1_s_at11/112+35650923..35654663expressed protein
LOC_Os02g58260Os.4723.1.S1_a_at11/112+35654789..35657708metallo-beta-lactamase family protein, putative, expressed
LOC_Os02g58270Os.23550.1.S2_at5/112+35659297..35661622metallo-beta-lactamase family protein, putative, expressed
LOC_Os02g58280Os.23550.1.S1_at9/112+35662131..35665757expressed protein
LOC_Os02g58290NANA2+35667046..35667417expressed protein
LOC_Os02g58300OsAffx.3101.1.S1_at11/112+35668931..35670484membrane-associated salt-inducible protein, putative, expressed
LOC_Os02g58310OsAffx.24921.1.S1_s_at11/112+35671112..35672185expressed protein
LOC_Os02g58320Os.17922.1.S1_at6/112+35673952..35675461BRICK1, putative, expressed
LOC_Os02g58320Os.13504.1.S1_s_at1/112+35673952..35675461BRICK1, putative, expressed
LOC_Os02g58330Os.54091.1.S1_at11/112+35675760..35677669pentatricopeptide, putative, expressed
LOC_Os02g58340Os.7317.1.S1_a_at11/112+35677642..35682603Peptidase family M3 containing protein, expressed
LOC_Os02g58350OsAffx.24922.1.S1_at11/112+35683378..35684521Two-component response regulator ARR3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23550.1.S2_at--918--2391Chr02:35660070..35660094 (25 bp)
AAACTTACTGGCAATGGTCCTTGGA
LOC_Os02g58270
Os.23550.1.S2_at--26--7791Chr02:35660055..35660079 (25 bp)
GGTCCTTGGAACATTGGAGCTGATT
LOC_Os02g58270
Os.23550.1.S2_at--684--311Chr02:35659804..35660030 (25 bp)
ATACCCAAGGTTCGGTCTGCTTGTT
LOC_Os02g58270
Os.23550.1.S2_at--1058--8731Chr02:35659598..35659723 (25 bp)
TGTACAGCAGGCAACCAGTGAGCTT
LOC_Os02g58270
Os.23550.1.S2_at--1162--1291Chr02:35659345..35659369 (25 bp)
AGATGTACACGCTAAGGATTCAGCA
LOC_Os02g58270
Os.23550.1.S2_at--956--10331Chr02:35659194..35659218 (25 bp)
TTTTTGAAAGACCAGCGTAGGCGGC
NONE
Os.23550.1.S2_at--492--8351Chr02:35659175..35659199 (25 bp)
GGCGGCTGGCATTCTATTTATCTTA
NONE
Os.23550.1.S2_at--867--7031Chr02:35659115..35659139 (25 bp)
GTAAAAATTTACACCCATGATGGCA
NONE
Os.23550.1.S2_at--25--2131Chr02:35659089..35659113 (25 bp)
ACAGGTTTGTCACCATGTCTATGAT
NONE
Os.23550.1.S2_at--368--7111Chr02:35659081..35659105 (25 bp)
GTCACCATGTCTATGATCTTCTCTA
NONE
Os.23550.1.S2_at--598--411Chr02:35659066..35659090 (25 bp)
ATCTTCTCTAAATCTTGGTACCTCC
NONE
Target Sequence 
AAACTTACTGGCAATGGTCCTTGGAACATTGGAGCTGATTTNGAACTTATCCATACCCCTGGCCATACCCAAGGTTCGGT
CTGCTTGTTCTACAAACCAGTAAAGGCGCTTTTCACTGGAGATCACGTTGCAAAATCAGAAGAATCTGATGATTTATATC
TCTTTCTTATGTACAGCAGGCAACCAGTGAGCTTGCAACTGGACAGCATGAGAAAATTGTTGAAGTTAGACTTCGAGTGG
TTTTTACCTGGACATGGCTATCGAATCCATTATAAAGATGTACACGCTAAGGATTCAGCAATCGAGTCCCTCATAGCTAT
AACTACACAAGCTAGGGGCATCTTATAATTCTCTCTACCTTCAGACTTCAGTGTACATAAATAACGATCAATTCTGGAAT
TAAGTGACCAAGAGGAAATGTACTTTTTTTTTGAAAGACCAGCGTAGGCGGCTGGCATTCTATTTATCTTAGAAGGAGCA
ATGTACAAATNGGNGATATAGGAAATGTAAAAATTTACACCCATGATGGCAAACAGGTTTGTCACCATGTCTATGATCTT
CTCTAAATCTTGGTACCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23550.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis