Browse Element(s) Details


Os.26501.1.S1_at

Description gb:AK069159.1
DB_XREF= gi:32979183
TID=Os.26501.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26501 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023007N07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007N07, full insert sequence.
FL= gb:AK069159.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5809011/11Splicing factor 3B subunit 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58030Os.38001.1.A1_at11/112+35520748..35527178leucine-rich repeat protein, putative, expressed
LOC_Os02g58040OsAffx.24916.1.S1_at10/112+35528270..35530261F-box domain containing protein
LOC_Os02g58050OsAffx.24917.1.S1_at11/112+35534428..35537623hypothetical protein
LOC_Os02g58060NANA2+35539057..35539365hypothetical protein
LOC_Os02g58070Os.8715.1.S1_at11/112+35539685..35542373oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os02g58080Os.26062.1.S1_a_at11/112+35543031..35547556sucrose transporter 2, putative, expressed
LOC_Os02g58090Os.26501.1.S1_at11/112+35547995..35553041Splicing factor 3B subunit 2, putative, expressed
LOC_Os02g58100OsAffx.3100.1.S1_at11/112+35553789..35555508expressed protein
LOC_Os02g58110OsAffx.12687.1.S1_at11/112+35556810..35561862expressed protein
LOC_Os02g58120Os.52638.1.S1_at10/112+35561852..35564542expressed protein
LOC_Os02g58139Os.49282.1.S1_x_at11/112+35566509..35572288pentatricopeptide, putative, expressed
LOC_Os02g58139Os.49282.2.S1_at11/112+35566509..35572288pentatricopeptide, putative, expressed
LOC_Os02g58160Os.53108.1.S1_at11/112+35572680..35576955expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006397biological_processmRNA processing
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26501.1.S1_at--906--7511Chr02:35552365..35552389 (25 bp)
GTGGATGTCACCATACAACCTGAGG
LOC_Os02g58090
Os.26501.1.S1_at--206--2831Chr02:35552755..35552779 (25 bp)
AAGTTCTAGATGTTGCCCTTTGCGA
LOC_Os02g58090
Os.26501.1.S1_at--766--10691Chr02:35552767..35552791 (25 bp)
TTGCCCTTTGCGAGTTAGCCAGATC
LOC_Os02g58090
Os.26501.1.S1_at--606--4691Chr02:35552805..35552829 (25 bp)
GCGGCACGGCATCCATCTGTTTTTT
LOC_Os02g58090
Os.26501.1.S1_at--272--10351Chr02:35552828..35552852 (25 bp)
TTTAGATTGCCCTTGTCTGAGAATA
LOC_Os02g58090
Os.26501.1.S1_at--1082--6111Chr02:35552870..35552894 (25 bp)
GAGTGTAGCAGCAGCACAGCCCTTT
LOC_Os02g58090
Os.26501.1.S1_at--928--1651Chr02:35552887..35552911 (25 bp)
AGCCCTTTTTTATGTGTGTGTGTAT
LOC_Os02g58090
Os.26501.1.S1_at--175--8771Chr02:35552912..35552936 (25 bp)
TGTATGACTGATGGCCTTCACCTTG
LOC_Os02g58090
Os.26501.1.S1_at--472--6231Chr02:35552921..35552945 (25 bp)
GATGGCCTTCACCTTGATATGATGA
LOC_Os02g58090
Os.26501.1.S1_at--844--6291Chr02:35552944..35552968 (25 bp)
GATGATGTTTACTTTACTGGACAAT
LOC_Os02g58090
Os.26501.1.S1_at--793--4031Chr02:35552993..35553017 (25 bp)
CGTTACGTTCTCTTTTCACATACTA
LOC_Os02g58090
Target Sequence 
GTGGATGTCACCATACAACCTGAGGNGCTTGAAGTTATGGATGATGTTTTGGCTGCCAAGTACGAGGAAGCCCGGGAGGA
GGAGAAGCTACGGAACCAGAAGGAAGATTTCAGCGACATGGTGGCGGAGAACGCAAGCAAGAGGAAGAGGAAGCAGGAGA
AGGACGGGAAGTCGAAGAAGAAAGACTTCAAGTTCTAGATGTTGCCCTTTGCGAGTTAGCCAGATCCAAGGAAGAGGAGG
CGGCACGGCATCCATCTGTTTTTTTAGATTGCCCTTGTCTGAGAATAGATGAATGCGTAGGCACGAGTGTAGCAGCAGCA
CAGCCCTTTTTTATGTGTGTGTGTATTGTATGACTGATGGCCTTCACCTTGATATGATGATGATGTTTACTTTACTGGAC
AATTATCGTGTAGTAGAGGACAGAGAGCGTTACGTTCTCTTTTCACATACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26501.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis