Browse Element(s) Details


Os.13484.1.S1_at

Description gb:C98392
DB_XREF= gi:3761144
DB_XREF=C98392
CLONE=C3091_6Z
TID=Os.13484.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.13484 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_192819.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5801011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57960OsAffx.3098.1.S1_at11/112+35492353..35495167Leucine Rich Repeat family protein
LOC_Os02g57960Os.23175.1.S1_at1/112+35492353..35495167Leucine Rich Repeat family protein
LOC_Os02g57970OsAffx.24913.1.S1_at10/112+35495498..35495790hypothetical protein
LOC_Os02g57980Os.26581.1.S1_at11/112+35496214..35501173DEAD/DEAH box helicase family protein, expressed
LOC_Os02g57990Os.9687.1.S1_at11/112+35501294..35505007methionine adenosyltransferase regulatory beta subunit, putative, expressed
LOC_Os02g57990Os.56368.1.S1_at3/112+35501294..35505007methionine adenosyltransferase regulatory beta subunit, putative, expressed
LOC_Os02g58000OsAffx.24914.1.S1_at11/112+35507203..35507472hypothetical protein
LOC_Os02g58010Os.13484.1.S1_at11/112+35509890..35511189expressed protein
LOC_Os02g58010OsAffx.24915.1.S1_at10/112+35509890..35511189expressed protein
LOC_Os02g58020Os.10758.1.S1_a_at11/112+35511679..35517489ABC transporter family protein, expressed
LOC_Os02g58030Os.38001.1.A1_at11/112+35520748..35527178leucine-rich repeat protein, putative, expressed
LOC_Os02g58040OsAffx.24916.1.S1_at10/112+35528270..35530261F-box domain containing protein
LOC_Os02g58050OsAffx.24917.1.S1_at11/112+35534428..35537623hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13484.1.S1_at--886--4151Chr02:35510927..35510951 (25 bp)
CGCCCGTATGACTACGCTACTGTTA
LOC_Os02g58010
Os.13484.1.S1_at--542--9951Chr02:35510915..35510939 (25 bp)
TACGCTACTGTTACTTGAGACGCCG
LOC_Os02g58010
Os.13484.1.S1_at--31--8911Chr02:35510900..35510924 (25 bp)
TGAGACGCCGCCTGCTAGTATGTGT
LOC_Os02g58010
Os.13484.1.S1_at--851--10051Chr02:35510885..35510909 (25 bp)
TAGTATGTGTCTTGGTCTTCTCCAT
LOC_Os02g58010
Os.13484.1.S1_at--1074--7131Chr02:35510860..35510884 (25 bp)
GTCTTCCAATTCCATCTGCTAGTGA
LOC_Os02g58010
Os.13484.1.S1_at--755--9231Chr02:35510850..35510874 (25 bp)
TCCATCTGCTAGTGAATGCTATCTT
LOC_Os02g58010
Os.13484.1.S1_at--612--631Chr02:35510835..35510859 (25 bp)
ATGCTATCTTTAGCCATTGTGACAA
LOC_Os02g58010
Os.13484.1.S1_at--509--3071Chr02:35510803..35510827 (25 bp)
AATAAACCATCTGTCTTTCCTATCG
LOC_Os02g58010
Os.13484.1.S1_at--1070--4271Chr02:35510769..35510793 (25 bp)
CCTCCGGCTGTGAATATCCGTGTGC
LOC_Os02g58010
Os.13484.1.S1_at--801--8991Chr02:35510759..35510783 (25 bp)
TGAATATCCGTGTGCCTTTTGTACT
LOC_Os02g58010
Os.13484.1.S1_at--155--7291Chr02:35510748..35510772 (25 bp)
GTGCCTTTTGTACTGGATTGCGTTA
LOC_Os02g58010
Target Sequence 
CGCCCGTATGACTACGCTACTGTTACTTGAGACGCCGCCTGCTAGTATGTGTCTTGGTCTTCTCCATGTCTTCCAATTCC
ATCTGCTAGTGAATGCTATCTTTAGCCATTGTGACAANCCAANCAATAAACCATCTGTCTTTCCTATCGTGANTTTCTNC
CTCCGGCTGTGAATATCCGTGTGCCTTTTGTACTGGATTGCGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13484.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis