Browse Element(s) Details


OsAffx.24914.1.S1_at

Description tigr:9630.m05787
TID=OsAffx.24914.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5800011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57960OsAffx.3098.1.S1_at11/112+35492353..35495167Leucine Rich Repeat family protein
LOC_Os02g57960Os.23175.1.S1_at1/112+35492353..35495167Leucine Rich Repeat family protein
LOC_Os02g57970OsAffx.24913.1.S1_at10/112+35495498..35495790hypothetical protein
LOC_Os02g57980Os.26581.1.S1_at11/112+35496214..35501173DEAD/DEAH box helicase family protein, expressed
LOC_Os02g57990Os.9687.1.S1_at11/112+35501294..35505007methionine adenosyltransferase regulatory beta subunit, putative, expressed
LOC_Os02g57990Os.56368.1.S1_at3/112+35501294..35505007methionine adenosyltransferase regulatory beta subunit, putative, expressed
LOC_Os02g58000OsAffx.24914.1.S1_at11/112+35507203..35507472hypothetical protein
LOC_Os02g58010Os.13484.1.S1_at11/112+35509890..35511189expressed protein
LOC_Os02g58010OsAffx.24915.1.S1_at10/112+35509890..35511189expressed protein
LOC_Os02g58020Os.10758.1.S1_a_at11/112+35511679..35517489ABC transporter family protein, expressed
LOC_Os02g58030Os.38001.1.A1_at11/112+35520748..35527178leucine-rich repeat protein, putative, expressed
LOC_Os02g58040OsAffx.24916.1.S1_at10/112+35528270..35530261F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24914.1.S1_at--270--111Chr02:35507239..35507263 (25 bp)
ATTCTGCTCCTGCTACTTGTCATGT
LOC_Os02g58000
OsAffx.24914.1.S1_at--251--9891Chr02:35507252..35507276 (25 bp)
TACTTGTCATGTCTCACTTGCCAAT
LOC_Os02g58000
OsAffx.24914.1.S1_at--384--9631Chr02:35507258..35507282 (25 bp)
TCATGTCTCACTTGCCAATCTCAAG
LOC_Os02g58000
OsAffx.24914.1.S1_at--988--9191Chr02:35507270..35507294 (25 bp)
TGCCAATCTCAAGCCTTGGTTCAAG
LOC_Os02g58000
OsAffx.24914.1.S1_at--242--1691Chr02:35507281..35507305 (25 bp)
AGCCTTGGTTCAAGGAGAGCATTCA
LOC_Os02g58000
OsAffx.24914.1.S1_at--346--5932Chr03:5671887..5672006 (25 bp)
GAGCATTCAGAGAAGAAGCTGTCAG
NONE
OsAffx.24914.1.S1_at--429--2691Chr02:35507312..35507336 (25 bp)
AAGCTGTCAGTGGTTTCAGAAGCCA
LOC_Os02g58000
OsAffx.24914.1.S1_at--406--10531Chr02:35507326..35507350 (25 bp)
TTCAGAAGCCATGAGCTTGCTCCAA
LOC_Os02g58000
OsAffx.24914.1.S1_at--751--691Chr02:35507336..35507360 (25 bp)
ATGAGCTTGCTCCAACCATGGCTCC
LOC_Os02g58000
OsAffx.24914.1.S1_at--184--2651Chr02:35507349..35507373 (25 bp)
AACCATGGCTCCTTCTCAAGAGAAA
LOC_Os02g58000
OsAffx.24914.1.S1_at--699--4151Chr02:35507394..35507418 (25 bp)
CGCCGGTAGCATCTGTGGCCAGAAG
LOC_Os02g58000
Target Sequence 
ATTCTGCTCCTGCTACTTGTCATGTCTCACTTGCCAATCTCAAGCCTTGGTTCAAGGAGAGCATTCAGAGAAGAAGCTGT
CAGTGGTTTCAGAAGCCATGAGCTTGCTCCAACCATGGCTCCTTCTCAAGAGAAAGAAGCAGGCGTCGTCGCCGGCGCCG
GTAGCATCTGTGGCCAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24914.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis