Browse Element(s) Details


Os.53591.1.S1_at

Description gb:AK073445.1
DB_XREF= gi:32983468
TID=Os.53591.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53591 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033044N10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044N10, full insert sequence.
FL= gb:AK073445.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5794011/11F-box domain containing protein, expressed
LOC_Os02g578901/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57920OsAffx.3097.1.S1_s_at11/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.38248.1.S1_at11/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.12010.1.S1_at10/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.12010.1.S1_x_at10/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920OsAffx.3097.1.S1_x_at9/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.39181.1.A1_at8/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.39181.1.A1_x_at4/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.43072.1.S1_x_at2/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.43072.1.S1_at2/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57930Os.27691.1.S1_x_at4/112+35460748..35466204retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g57940Os.53591.1.S1_at11/112+35476075..35478087F-box domain containing protein, expressed
LOC_Os02g57950OsAffx.24912.1.S1_at11/112+35481694..35482183hypothetical protein
LOC_Os02g57960OsAffx.3098.1.S1_at11/112+35492353..35495167Leucine Rich Repeat family protein
LOC_Os02g57960Os.23175.1.S1_at1/112+35492353..35495167Leucine Rich Repeat family protein
LOC_Os02g57970OsAffx.24913.1.S1_at10/112+35495498..35495790hypothetical protein
LOC_Os02g57980Os.26581.1.S1_at11/112+35496214..35501173DEAD/DEAH box helicase family protein, expressed
LOC_Os02g57990Os.9687.1.S1_at11/112+35501294..35505007methionine adenosyltransferase regulatory beta subunit, putative, expressed
LOC_Os02g57990Os.56368.1.S1_at3/112+35501294..35505007methionine adenosyltransferase regulatory beta subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53591.1.S1_at--675--8031Chr02:35476651..35476675 (25 bp)
GGAGTGCCCAAAACTGCTGGAGCCT
LOC_Os02g57940
Os.53591.1.S1_at--150--2431Chr02:35476642..35476666 (25 bp)
AAAACTGCTGGAGCCTGTTCTTCAG
LOC_Os02g57940
Os.53591.1.S1_at--538--1211Chr02:35476609..35476633 (25 bp)
AGTTTTGAGTCTGGATGAACTCCCA
LOC_Os02g57940
Os.53591.1.S1_at--894--2732Chr02:35476583..35476607 (25 bp)
AAGAATGTGATATCGCTTAGACAAG
LOC_Os02g57940
Os.53591.1.S1_at--44--2231Chr02:35476563..35476587 (25 bp)
ACAAGATTCTTTCTCGAGGCTGCAC
LOC_Os02g57940
Os.53591.1.S1_at--259--2191Chr02:35476443..35476467 (25 bp)
ACAAACGTGGAATGGGAGTCATCCG
LOC_Os02g57940
Os.53591.1.S1_at--1140--9131Chr02:35476318..35476342 (25 bp)
TGCGGTTAACCTAGAGAACATATCC
LOC_Os02g57940
Os.53591.1.S1_at--853--10031Chr02:35476307..35476331 (25 bp)
TAGAGAACATATCCCTGCATGACAG
LOC_Os02g57940
Os.53591.1.S1_at--53--9311Chr02:35476296..35476320 (25 bp)
TCCCTGCATGACAGGAAGGTGCTCA
LOC_Os02g57940
Os.53591.1.S1_at--83--3971Chr02:35476121..35476145 (25 bp)
CGGTGCAAAACTGTGATTCACTGTA
LOC_Os02g57940
Os.53591.1.S1_at--830--251Chr02:35476080..35476104 (25 bp)
ATATGCTGAATGTTCCAATCGTTTC
LOC_Os02g57940
Target Sequence 
GGAGTGCCCAAAACTGCTGGAGCCTGTTCTTCAGAATCTGCAAGTTTTGAGTCTGGATGAACTCCCAGAAGAATGTGATA
TCGCTTAGACAAGATTCTTTCTCGAGGCTGCACCCTCCCTGAAGGAGATGTGCATCACAGTTTGGGACCATTGGTGTGAG
ATTGAGACAGACAAGGTGAAACGGGAAAAACAGGGTTACTGTGACAAAACAAACGTGGAATGGGAGTCATCCGCACCTGA
TGGTTTTAGGCATTACAACCTGACTAAGCTCACCATCTATGGTTTCCAACCAAATGAGAACTTTATGGGATACATCAGGC
ACGTCATGGAAGCTGCGGTTAACCTAGAGAACATATCCCTGCATGACAGGAAGGTGCTCAAGTGCTGTGAAGAGTTGGAT
CCCAAGATCAAGGTTGCTCCGTCAAGGTATCCGCAGACCATCGAGGAGCAGGAGCTGCTGAGGAAGCAAATTACAGAGGG
ATTGGTGATGGCGTCGCCTCATGCAGTTCACTTCCGGTCTTAATTTTGCTCGGTGCAAAACTGTGATTCACTGTATGGTA
CTGGTAATAATATATGCTGAATGTTCCAATCGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53591.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis