Browse Element(s) Details


Os.38248.1.S1_at

Description gb:AK070772.1
DB_XREF= gi:32980795
TID=Os.38248.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38248 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023069C19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023069C19, full insert sequence.
FL= gb:AK070772.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5792011/11Cation transporter/ATPase, N-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57850Os.11920.1.S1_s_at1/112+35420449..35421472hypothetical protein
LOC_Os02g57860Os.23627.1.A1_at6/112+35425163..35426971F-box domain containing protein, expressed
LOC_Os02g57870Os.23608.1.S1_at11/112+35427793..35429999expressed protein
LOC_Os02g57880Os.23175.1.S1_at2/112+35431872..35433039hypothetical protein
LOC_Os02g57890Os.53591.1.S1_at1/112+35435057..35436739F-box domain containing protein
LOC_Os02g57890OsAffx.3098.1.S1_at1/112+35435057..35436739F-box domain containing protein
LOC_Os02g57900OsAffx.12685.1.S1_at9/112+35437471..35441000hypothetical protein
LOC_Os02g57900Os.53104.1.S1_at2/112+35437471..35441000hypothetical protein
LOC_Os02g57900OsAffx.18815.1.S1_x_at1/112+35437471..35441000hypothetical protein
LOC_Os02g57910Os.23175.1.S1_at11/112+35441874..35444096F-box domain containing protein, expressed
LOC_Os02g57920OsAffx.3097.1.S1_s_at11/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.38248.1.S1_at11/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.12010.1.S1_at10/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.12010.1.S1_x_at10/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920OsAffx.3097.1.S1_x_at9/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.39181.1.A1_at8/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.39181.1.A1_x_at4/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.43072.1.S1_x_at2/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.43072.1.S1_at2/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57930Os.27691.1.S1_x_at4/112+35460748..35466204retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g57940Os.53591.1.S1_at11/112+35476075..35478087F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015992biological_processproton transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
GO:0008553molecular_functionhydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38248.1.S1_at--752--8892Chr02:35446395..35446419 (25 bp)
TGAGATCCTAACACCATTCTGGTCA
LOC_Os02g57920
Os.38248.1.S1_at--348--6032Chr02:35446394..35446418 (25 bp)
GAGATCCTAACACCATTCTGGTCAA
LOC_Os02g57920
Os.38248.1.S1_at--715--6372Chr02:35446392..35446416 (25 bp)
GATCCTAACACCATTCTGGTCAATT
LOC_Os02g57920
Os.38248.1.S1_at--852--9252Chr02:35446390..35446414 (25 bp)
TCCTAACACCATTCTGGTCAATTGT
LOC_Os02g57920
Os.38248.1.S1_at--882--2152Chr02:35446385..35446409 (25 bp)
ACACCATTCTGGTCAATTGTTTAAA
LOC_Os02g57920
Os.38248.1.S1_at--640--1732Chr02:35446383..35446407 (25 bp)
ACCATTCTGGTCAATTGTTTAAATT
LOC_Os02g57920
Os.38248.1.S1_at--1104--3112Chr02:35446325..35446349 (25 bp)
AATTTAAGATGAGCCCATTGTGCCG
LOC_Os02g57920
Os.38248.1.S1_at--957--10492Chr02:35446322..35446346 (25 bp)
TTAAGATGAGCCCATTGTGCCGTGC
LOC_Os02g57920
Os.38248.1.S1_at--908--2792Chr02:35446320..35446344 (25 bp)
AAGATGAGCCCATTGTGCCGTGCGA
LOC_Os02g57920
Os.38248.1.S1_at--350--1312Chr02:35446319..35446343 (25 bp)
AGATGAGCCCATTGTGCCGTGCGAC
LOC_Os02g57920
Os.38248.1.S1_at--1031--6292Chr02:35446319..35446342 (24 bp)
GATGAGCCCATTGTGCCGTGCGACT
LOC_Os02g57920
Target Sequence 
TGAGATCCTAACACCATTCTGGTCAATTGTTTAAATTTTATATTAGAAGTGTATTGATATATTCAAATTTAATTTAAGAT
GAGCCCATTGTGCCGTGCGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38248.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis