Browse Element(s) Details


Os.23608.1.S1_at

Description gb:AK103528.1
DB_XREF= gi:32988737
TID=Os.23608.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.23608 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033131M21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033131M21, full insert sequence.
FL= gb:AK103528.1 gb:AK073217.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5787011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57810NANA2+35403554..35405149Cytochrome P450 family protein
LOC_Os02g57820Os.14536.1.S1_at11/112+35409399..35413595AT hook motif family protein, expressed
LOC_Os02g57830OsAffx.24910.1.S1_at11/112+35415150..35417750expressed protein
LOC_Os02g57830Os.7375.1.S1_at11/112+35415150..35417750expressed protein
LOC_Os02g57840Os.28617.1.S1_at11/112+35418133..35419754Remorin, C-terminal region family protein, expressed
LOC_Os02g57850Os.11920.1.S1_s_at1/112+35420449..35421472hypothetical protein
LOC_Os02g57860Os.23627.1.A1_at6/112+35425163..35426971F-box domain containing protein, expressed
LOC_Os02g57870Os.23608.1.S1_at11/112+35427793..35429999expressed protein
LOC_Os02g57880Os.23175.1.S1_at2/112+35431872..35433039hypothetical protein
LOC_Os02g57890Os.53591.1.S1_at1/112+35435057..35436739F-box domain containing protein
LOC_Os02g57890OsAffx.3098.1.S1_at1/112+35435057..35436739F-box domain containing protein
LOC_Os02g57900OsAffx.12685.1.S1_at9/112+35437471..35441000hypothetical protein
LOC_Os02g57900Os.53104.1.S1_at2/112+35437471..35441000hypothetical protein
LOC_Os02g57900OsAffx.18815.1.S1_x_at1/112+35437471..35441000hypothetical protein
LOC_Os02g57910Os.23175.1.S1_at11/112+35441874..35444096F-box domain containing protein, expressed
LOC_Os02g57920OsAffx.3097.1.S1_s_at11/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.38248.1.S1_at11/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.12010.1.S1_at10/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.12010.1.S1_x_at10/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920OsAffx.3097.1.S1_x_at9/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.39181.1.A1_at8/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.39181.1.A1_x_at4/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.43072.1.S1_x_at2/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.43072.1.S1_at2/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23608.1.S1_at--595--3871Chr02:35428366..35428390 (25 bp)
CTGTTCTCCAGAAACTGCGGGTTTT
LOC_Os02g57870
Os.23608.1.S1_at--894--5251Chr02:35428341..35428365 (25 bp)
GAATCTGGATAGACTCCCCGAGGGA
LOC_Os02g57870
Os.23608.1.S1_at--1006--2211Chr02:35428301..35428325 (25 bp)
ACAAGATTCTTCCTCGAGGCAGCGC
LOC_Os02g57870
Os.23608.1.S1_at--554--1651Chr02:35428281..35428305 (25 bp)
AGCGCCTAACCTGAAGATGTCCATC
LOC_Os02g57870
Os.23608.1.S1_at--641--8511Chr02:35428171..35428195 (25 bp)
TGGCAAAGCTCACAACCTGATGGTT
LOC_Os02g57870
Os.23608.1.S1_at--989--5651Chr02:35428027..35428051 (25 bp)
GACAGGAGGTTCTCTGATTGCTGCA
LOC_Os02g57870
Os.23608.1.S1_at--842--71Chr02:35428011..35428035 (25 bp)
ATTGCTGCAGTGACCTTGATCCCAA
LOC_Os02g57870
Os.23608.1.S1_at--1036--1231Chr02:35427974..35427998 (25 bp)
AGTTGCTCTGTCAAGATTTCCGCGG
LOC_Os02g57870
Os.23608.1.S1_at--412--1071Chr02:35427909..35427933 (25 bp)
AGGGATTCGGGATTGCTTCCTCTGA
LOC_Os02g57870
Os.23608.1.S1_at--416--4911Chr02:35427895..35427919 (25 bp)
GCTTCCTCTGATATAATTCGCTTCC
LOC_Os02g57870
Os.23608.1.S1_at--361--3151Chr02:35427881..35427905 (25 bp)
AATTCGCTTCCGGTCTTAAATCTGA
LOC_Os02g57870
Target Sequence 
CTGTTCTCCAGAAACTGCGGGTTTTGAATCTGGATAGACTCCCCGAGGGATGTGATATAGCTTGGACAAGATTCTTCCTC
GAGGCAGCGCCTAACCTGAAGATGTCCATCACAGTTTGGGACCATTGGTGTGACATGGAGACTGACAGNGNGGAACGGGG
AAGAACTGGGTTACCGTGACAAAACAAACGTGGAGTGGCAAAGCTCACAACCTGATGGTTTCAAGCATCACAATCTGGTT
AAGCTCATCATNTACGGTTTTCAACCTGATGACAACTTCGTTGGATACATCAGGTGCATGATGGAAGCCGCGGTTAACCT
AGTGAGGATATCCCTGTACGACAGGAGGTTCTCTGATTGCTGCAGTGACCTTGATCCCAAGATCAAGATCAAAGTTGCTC
TGTCAAGATTTCCGCGGACCATCAAGCAGCAGGAGTTGGTGAGGAGGAAAATTACAGAGGGATTCGGGATTGCTTCCTCT
GATATAATTCGCTTCCGGTCTTAAATCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23608.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis