Browse Element(s) Details


Os.14536.1.S1_at

Description gb:AK066031.1
DB_XREF= gi:32976049
TID=Os.14536.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14536 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013047F17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013047F17, full insert sequence.
FL= gb:AK066031.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5782011/11AT hook motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57790OsAffx.24908.1.S1_at11/112+35383735..35384718Zinc finger, C2H2 type family protein
LOC_Os02g57800OsAffx.12684.1.S1_at10/112+35392089..35397227expressed protein
LOC_Os02g57810NANA2+35403554..35405149Cytochrome P450 family protein
LOC_Os02g57820Os.14536.1.S1_at11/112+35409399..35413595AT hook motif family protein, expressed
LOC_Os02g57830OsAffx.24910.1.S1_at11/112+35415150..35417750expressed protein
LOC_Os02g57830Os.7375.1.S1_at11/112+35415150..35417750expressed protein
LOC_Os02g57840Os.28617.1.S1_at11/112+35418133..35419754Remorin, C-terminal region family protein, expressed
LOC_Os02g57850Os.11920.1.S1_s_at1/112+35420449..35421472hypothetical protein
LOC_Os02g57860Os.23627.1.A1_at6/112+35425163..35426971F-box domain containing protein, expressed
LOC_Os02g57870Os.23608.1.S1_at11/112+35427793..35429999expressed protein
LOC_Os02g57880Os.23175.1.S1_at2/112+35431872..35433039hypothetical protein
LOC_Os02g57890Os.53591.1.S1_at1/112+35435057..35436739F-box domain containing protein
LOC_Os02g57890OsAffx.3098.1.S1_at1/112+35435057..35436739F-box domain containing protein
LOC_Os02g57900OsAffx.12685.1.S1_at9/112+35437471..35441000hypothetical protein
LOC_Os02g57900Os.53104.1.S1_at2/112+35437471..35441000hypothetical protein
LOC_Os02g57900OsAffx.18815.1.S1_x_at1/112+35437471..35441000hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14536.1.S1_at--369--8071Chr02:35409996..35410020 (25 bp)
GGAGCTTCATGTATGGTGGGACAAA
LOC_Os02g57820
Os.14536.1.S1_at--1133--3251Chr02:35409878..35409902 (25 bp)
CAACATGCCGCATCATACGATGGGT
LOC_Os02g57820
Os.14536.1.S1_at--516--5691Chr02:35409823..35409847 (25 bp)
GACTCAAGAACTCCAAACATCGACA
LOC_Os02g57820
Os.14536.1.S1_at--574--8191Chr02:35409764..35409788 (25 bp)
GGAAGGAAGGAGCACCACCTATATA
LOC_Os02g57820
Os.14536.1.S1_at--240--9551Chr02:35409739..35409763 (25 bp)
TCTATCTCTGACTGACGGAATTCCC
LOC_Os02g57820
Os.14536.1.S1_at--243--8211Chr02:35409723..35409747 (25 bp)
GGAATTCCCCGAATCCCCGTGAGTG
LOC_Os02g57820
Os.14536.1.S1_at--140--7851Chr02:35409693..35409717 (25 bp)
GGTAGCATGCAATGCAACGCGATGC
LOC_Os02g57820
Os.14536.1.S1_at--369--2611Chr02:35409678..35409702 (25 bp)
AACGCGATGCGCTAACTTGCTGTAG
LOC_Os02g57820
Os.14536.1.S1_at--991--7111Chr02:35409598..35409622 (25 bp)
GTCAGTGCTATGTTAGGAACTCCTC
LOC_Os02g57820
Os.14536.1.S1_at--97--8171Chr02:35409583..35409607 (25 bp)
GGAACTCCTCTACATACTAAGTATT
LOC_Os02g57820
Os.14536.1.S1_at--860--6371Chr02:35409486..35409510 (25 bp)
GATCCGGATCGTACCCTATTATATT
LOC_Os02g57820
Target Sequence 
GGAGCTTCATGTATGGTGGGACAAAGAAAAANTAAAGCGAAAGCTGAGCAAGAGACGGAGAATAACGAAGAGCCAATTGG
CGGTGAGGAGGAGACCCCCNCAATGGCNCTGCCAGATCACAACATGCCGCATCATACGATGGGTGGATGGTCGNCTGGGT
TGATGAGGCAGATGGACTCAAGAACTCCAAACATCGACATCAACTCTATNCGCGAGTAATGTGTATTATTGCTGGAAGGA
AGGAGCACCACCTATATANTCTATCTCTGACTGACGGAATTCCCCGAATCCCCGTGAGTGCNCTTGGTAGCATGCAATGC
AACGCGATGCGCTAACTTGCTGTAGGTGTAAGAGGAAGAGAGTTGTTTGAGAAATGATGTTGCTGGATGCTGAGGTATAT
GTCAGTGCTATGTTAGGAACTCCTCTACATACTAAGTATTAGAATATGAATGTTATGGTGGTGTACTGTGAATCTGCTGC
ATCTGCATCTGCGGTGTTGTATGAGAATGAAGGATCCGGATCGTACCCTATTATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14536.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis