Browse Element(s) Details


OsAffx.12684.1.S1_at

Description tigr:9630.m05765
TID=OsAffx.12684.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5780010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57760Os.54406.1.S1_at9/112+35364662..35367650O-methyltransferase family protein, expressed
LOC_Os02g57764NANA2+35367655..35367987expressed protein
LOC_Os02g57770OsAffx.12683.1.S1_at11/112+35370866..35372888Glycosyl hydrolases family 16 protein
LOC_Os02g57780Os.50248.1.S1_at11/112+35373509..35378628expressed protein
LOC_Os02g57790OsAffx.24908.1.S1_at11/112+35383735..35384718Zinc finger, C2H2 type family protein
LOC_Os02g57800OsAffx.12684.1.S1_at10/112+35392089..35397227expressed protein
LOC_Os02g57810NANA2+35403554..35405149Cytochrome P450 family protein
LOC_Os02g57820Os.14536.1.S1_at11/112+35409399..35413595AT hook motif family protein, expressed
LOC_Os02g57830OsAffx.24910.1.S1_at11/112+35415150..35417750expressed protein
LOC_Os02g57830Os.7375.1.S1_at11/112+35415150..35417750expressed protein
LOC_Os02g57840Os.28617.1.S1_at11/112+35418133..35419754Remorin, C-terminal region family protein, expressed
LOC_Os02g57850Os.11920.1.S1_s_at1/112+35420449..35421472hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12684.1.S1_at--775--291Chr02:35394914..35394938 (25 bp)
ATAGCTACTTTCAACACGCTTCTGG
LOC_Os02g57800
OsAffx.12684.1.S1_at--105--5971Chr02:35394862..35394886 (25 bp)
GAGAAGCAGGCACCGTGCTCATTGA
LOC_Os02g57800
OsAffx.12684.1.S1_at--573--7591Chr02:35394824..35394848 (25 bp)
GGGCTTGAACCCAATAATCTCACCT
LOC_Os02g57800
OsAffx.12684.1.S1_at--46--3071Chr02:35394809..35394833 (25 bp)
AATCTCACCTATGACATACTGGCTA
LOC_Os02g57800
OsAffx.12684.1.S1_at--984--9891Chr02:35394793..35394817 (25 bp)
TACTGGCTACAGGACATGGAAAACA
LOC_Os02g57800
OsAffx.12684.1.S1_at--778--1331Chr02:35394617..35394641 (25 bp)
AGAGGTGTTCATCCTACATCCTGTA
LOC_Os02g57800
OsAffx.12684.1.S1_at--1137--2091Chr02:35394602..35394626 (25 bp)
ACATCCTGTACTTATGATATCCTTG
LOC_Os02g57800
OsAffx.12684.1.S1_at--916--311Chr02:35394180..35394204 (25 bp)
ATACTGCTTCAGTGCATCTAGACAT
LOC_Os02g57800
OsAffx.12684.1.S1_at--887--6571Chr02:35393498..35393522 (25 bp)
GATTGCCATATCCAGGGTCAATCTT
LOC_Os02g57800
OsAffx.12684.1.S1_at--200--4951NONE
GCATTGCAGTTCATGTCTTTGTATT
NONE
OsAffx.12684.1.S1_at--404--8131Chr02:35392625..35392649 (25 bp)
GGACTTCAGCAATTTTATTCACTTC
LOC_Os02g57800
Target Sequence 
ATAGCTACTTTCAACACGCTTCTGGGTGGTCTTGAGTCTGTTGGAAGGATCGGAGAAGCAGGCACCGTGCTCATTGAGAT
GGAGAAGAGTGGGCTTGAACCCAATAATCTCACCTATGACATACTGGCTACAGGACATGGAAAACAAAGCAACAAAGTCG
AAGCAATGAGATTGTATTGTGAAATGGTGGGAAAGGGCTTTGTTCCTAAAGTAAGCACTTATAATGCTCTTATAAGTGAC
TTCACTAAAGCAGGAATGATGACTCAAGCTAAAGAGCTCTTCAAGGATATGCAAAAGAGAGGTGTTCATCCTACATCCTG
TACTTATGATATCCTTGTAAGTGGATGGTATGATCTTGCAAGAGAGCAGAAATCCCAGAATACATATTTTACGGAAATAT
ACTGCTTCAGTGCATCTAGACATCAATCAAAGATTGCCATATCCAGGGTCAATCTTGCATTGCAGTTCATGTCTTTGTAT
TTGAATGGACCAAAAATGAATTGGCTGAACGGACTTCAGCAATTTTATTCACTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis