Browse Element(s) Details


OsAffx.12683.1.S1_at

Description tigr:9630.m05762
TID=OsAffx.12683.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyl hydrolases family 16, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5777011/11Glycosyl hydrolases family 16 protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57730OsAffx.12682.1.S1_at11/112+35346072..35347837hypothetical protein
LOC_Os02g57740Os.8352.1.S1_at3/112+35349481..35351038hypothetical protein
LOC_Os02g57750Os.17210.1.S1_at11/112+35357005..35363032expressed protein
LOC_Os02g57760Os.54406.1.S1_at9/112+35364662..35367650O-methyltransferase family protein, expressed
LOC_Os02g57764NANA2+35367655..35367987expressed protein
LOC_Os02g57770OsAffx.12683.1.S1_at11/112+35370866..35372888Glycosyl hydrolases family 16 protein
LOC_Os02g57780Os.50248.1.S1_at11/112+35373509..35378628expressed protein
LOC_Os02g57790OsAffx.24908.1.S1_at11/112+35383735..35384718Zinc finger, C2H2 type family protein
LOC_Os02g57800OsAffx.12684.1.S1_at10/112+35392089..35397227expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0010087biological_processvascular tissue development (sensu Tracheophyta)
GO:0042546biological_processcell wall biosynthesis
GO:0016762molecular_functionxyloglucan:xyloglucosyl transferase activity
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12683.1.S1_at--1136--1851Chr02:35371245..35371269 (25 bp)
ACGACGTGCCGATCCGGCGGTACGG
LOC_Os02g57770
OsAffx.12683.1.S1_at--294--4251Chr02:35371189..35371213 (25 bp)
CCGGCGAGGCCGATGTGGGTATACG
LOC_Os02g57770
OsAffx.12683.1.S1_at--266--7031Chr02:35371121..35371145 (25 bp)
GTACAGGGCGGACTACAGTTACCAG
LOC_Os02g57770
OsAffx.12683.1.S1_at--392--1071Chr02:35371117..35371141 (25 bp)
AGGGCGGACTACAGTTACCAGCCGT
LOC_Os02g57770
OsAffx.12683.1.S1_at--525--8111Chr02:35371112..35371136 (25 bp)
GGACTACAGTTACCAGCCGTTCGTC
LOC_Os02g57770
OsAffx.12683.1.S1_at--279--611Chr02:35370985..35371009 (25 bp)
ATGCGCTGGGCGCAGCGCTTCCACA
LOC_Os02g57770
OsAffx.12683.1.S1_at--977--1631Chr02:35370972..35370996 (25 bp)
AGCGCTTCCACATGGTCTACAACTA
LOC_Os02g57770
OsAffx.12683.1.S1_at--1018--4911Chr02:35370969..35370993 (25 bp)
GCTTCCACATGGTCTACAACTACTG
LOC_Os02g57770
OsAffx.12683.1.S1_at--1063--9191Chr02:35370966..35370990 (25 bp)
TCCACATGGTCTACAACTACTGCTA
LOC_Os02g57770
OsAffx.12683.1.S1_at--705--4851Chr02:35370945..35370969 (25 bp)
GCTACGACCCCAAGCGGGATCATTC
LOC_Os02g57770
OsAffx.12683.1.S1_at--878--7611Chr02:35370930..35370954 (25 bp)
GGGATCATTCCCTCACCCCGGAATG
LOC_Os02g57770
Target Sequence 
ACGACGTGCCGATCCGGCGGTACGGGCGGCGGAGCGCGGGGGGCGCGGCGGGGTTCCCGGCGAGGCCGATGTGGGTATAC
GGCTCCATCTGGGACGCGTCGTCGTGGGCGACGGAGGACGGCAGGTACAGGGCGGACTACAGTTACCAGCCGTTCGTCGC
GCGCTTCTCGGCCTTCCTCCTCCGGGGATGCTCGCCGCACGCGCCCCGCACCTGCGCCGCCCCCGTCGCCGGCGACCTCA
CCGCCGCCCAGCTCGCCGCCATGCGCTGGGCGCAGCGCTTCCACATGGTCTACAACTACTGCTACGACCCCAAGCGGGAT
CATTCCCTCACCCCGGAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12683.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis