Browse Element(s) Details


Os.17210.1.S1_at

Description gb:AK069544.1
DB_XREF= gi:32979568
TID=Os.17210.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.17210 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-003-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022A15, full insert sequence.
FL= gb:AK099915.1 gb:AK104995.2 gb:AK069544.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5775011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57700OsAffx.3096.1.S1_s_at11/112+35328463..35334747U-box domain containing protein, expressed
LOC_Os02g57710Os.46745.1.S1_at11/112+35335865..35341494signal peptide peptidase family protein, expressed
LOC_Os02g57720Os.9222.1.S1_at11/112+35343804..35345571Aquaporin RWC3, putative, expressed
LOC_Os02g57730OsAffx.12682.1.S1_at11/112+35346072..35347837hypothetical protein
LOC_Os02g57740Os.8352.1.S1_at3/112+35349481..35351038hypothetical protein
LOC_Os02g57750Os.17210.1.S1_at11/112+35357005..35363032expressed protein
LOC_Os02g57760Os.54406.1.S1_at9/112+35364662..35367650O-methyltransferase family protein, expressed
LOC_Os02g57764NANA2+35367655..35367987expressed protein
LOC_Os02g57770OsAffx.12683.1.S1_at11/112+35370866..35372888Glycosyl hydrolases family 16 protein
LOC_Os02g57780Os.50248.1.S1_at11/112+35373509..35378628expressed protein
LOC_Os02g57790OsAffx.24908.1.S1_at11/112+35383735..35384718Zinc finger, C2H2 type family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17210.1.S1_at--927--2871Chr02:35362352..35362376 (25 bp)
AAGGGAACCTGCTGCGTATGCTGCG
LOC_Os02g57750
Os.17210.1.S1_at--559--4631Chr02:35362374..35362398 (25 bp)
GCGATGCGCAAATTGATTCTCTATT
LOC_Os02g57750
Os.17210.1.S1_at--616--4671Chr02:35362506..35362530 (25 bp)
GCGGGCACATGTGTACTTGCTCAAA
LOC_Os02g57750
Os.17210.1.S1_at--154--7491Chr02:35362554..35362578 (25 bp)
GTGGTGGCAAATGCCCACTATGCCG
LOC_Os02g57750
Os.17210.1.S1_at--230--6813Chr03:12739352..12739376 (25 bp)
GTTTTGCTGCACGAAGCTTTGTTCA
NONE
Os.17210.1.S1_at--818--6891Chr02:35362788..35362812 (25 bp)
GTATCTATCGATCTACTACAGGTTT
LOC_Os02g57750
Os.17210.1.S1_at--901--10251Chr02:35362818..35362842 (25 bp)
TTTGTTGCCTTGCTGTTGGCCGCAG
LOC_Os02g57750
Os.17210.1.S1_at--262--1631Chr02:35362915..35362939 (25 bp)
AGCGGCTGCCCATTGTAAGTTCTTT
LOC_Os02g57750
Os.17210.1.S1_at--660--6731Chr02:35362933..35362957 (25 bp)
GTTCTTTCCCTGTATTTATGTCCTG
LOC_Os02g57750
Os.17210.1.S1_at--720--1411Chr02:35362976..35363000 (25 bp)
AGACACTGGCAGTTACTCATATAGA
LOC_Os02g57750
Os.17210.1.S1_at--686--10211Chr02:35363002..35363026 (25 bp)
TATTAATCTAATCCCACCTCTTTTG
LOC_Os02g57750
Target Sequence 
AAGGGAACCTGCTGCGTATGCTGCGATGCGCAAATTGATTCTCTATTATACAGATGCGGGCACATGTGTACTTGCTCAAA
ATGTGCAAACGAGCTAATTCGCAGTGGTGGCAAATGCCCACTATGCCGAGCGCCGATCGCGGAGGTGGTTCGGGCATATT
CAGTAATGTAAAGTTGTGGAAATACAGTAGGGAAGGGAATAAAACTGATGGAAAAAGCGAAGTTTTGCTGCACGAAGCTT
TGTTCAGGAAAAAGGGGAAACAAGAGCTCTGCTGCTGCTTCTTCNTCATTCTTTTTCTTCTTCCATTTTTGTCTGTCCTC
TCTCGTCTTCTTCTTGTGTATCTATCGATCTACTACAGGTTTACATATTTGTTGCCTTGCTGTTGGCCGCAGCGCGAGCA
GCAAAGGGCGTGTTAATTGATTGTTGGAAAGAGTTTGCGATGGGTAGGACTGGAGTAAAAAGAGAGCGGCTGCCCATTGT
AAGTTCTTTCCCTGTATTTATGTCCTGAACTGAACTGAACAGAAGAGACACTGGCAGTTACTCATATAGATTATTAATCT
AATCCCACCTCTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis