Browse Element(s) Details


Os.9222.1.S1_at

Description gb:AK102174.1
DB_XREF= gi:32987383
TID=Os.9222.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9222 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033086K14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086K14, full insert sequence.
FL= gb:AK102174.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5772011/11Aquaporin RWC3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57690Os.24122.1.A1_at10/112+35319744..35326049kelch repeat-containing protein, putative, expressed
LOC_Os02g57700OsAffx.3096.1.S1_s_at11/112+35328463..35334747U-box domain containing protein, expressed
LOC_Os02g57710Os.46745.1.S1_at11/112+35335865..35341494signal peptide peptidase family protein, expressed
LOC_Os02g57720Os.9222.1.S1_at11/112+35343804..35345571Aquaporin RWC3, putative, expressed
LOC_Os02g57730OsAffx.12682.1.S1_at11/112+35346072..35347837hypothetical protein
LOC_Os02g57740Os.8352.1.S1_at3/112+35349481..35351038hypothetical protein
LOC_Os02g57750Os.17210.1.S1_at11/112+35357005..35363032expressed protein
LOC_Os02g57760Os.54406.1.S1_at9/112+35364662..35367650O-methyltransferase family protein, expressed
LOC_Os02g57764NANA2+35367655..35367987expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006833biological_processwater transport
GO:0009651biological_processresponse to salt stress
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9222.1.S1_at--724--8611Chr02:35345015..35345039 (25 bp)
TGGTGATCAGAGCAATCCCCTTCAA
LOC_Os02g57720
Os.9222.1.S1_at--467--9711Chr02:35345104..35345128 (25 bp)
TCAACCGAGTTGATGCTGCAAGATG
LOC_Os02g57720
Os.9222.1.S1_at--845--7951Chr02:35345134..35345158 (25 bp)
GGATCAAGTCTCTACAGTACTACGT
LOC_Os02g57720
Os.9222.1.S1_at--782--7011Chr02:35345150..35345174 (25 bp)
GTACTACGTGTGTTATTACCGTCTG
LOC_Os02g57720
Os.9222.1.S1_at--715--6391Chr02:35345177..35345201 (25 bp)
GATCGATGAAGCTAGCCGCTGCATA
LOC_Os02g57720
Os.9222.1.S1_at--966--6192Chr02:35345295..35345319 (25 bp)
GAGGCATGCATGTTCTTGGTTGCAC
LOC_Os02g57720
Os.9222.1.S1_at--828--291Chr02:35345334..35345358 (25 bp)
ATAGCTTTGCATCAATTCCATCTCC
LOC_Os02g57720
Os.9222.1.S1_at--130--10211Chr02:35345426..35345450 (25 bp)
TATTTGATCCCCTCTCGTTAAGTAA
LOC_Os02g57720
Os.9222.1.S1_at--127--331Chr02:35345487..35345511 (25 bp)
ATACTGATATGCTATCGGCCCTATC
LOC_Os02g57720
Os.9222.1.S1_at--102--8411Chr02:35345512..35345536 (25 bp)
GGCGCCATTATTGCCGGGTCTTCAA
LOC_Os02g57720
Os.9222.1.S1_at--1086--3951Chr02:35345526..35345550 (25 bp)
CGGGTCTTCAAATGCCACGGTGTAT
LOC_Os02g57720
Target Sequence 
TGGTGATCAGAGCAATCCCCTTCAAGAGCCGGGACTAATTAATTACCATGCANCATCATCTTAATTAAGCGATAATTACT
CTGAAATAATCAACCGAGTTGATGCTGCAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTG
GTGATCGATGAAGCTAGCCGCTGCATAATTATAAGCGCGTTTATATATATCTGATGTTGCTGTAATTATATCTATGTGTA
CGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTGCGGAGGCATGCATGTTCTTGGTTGCACGCCTTCAGCTANTAT
ATAGCTTTGCATCAATTCCATCTCCAANTGTGAATTTTACTAGTTACTATTTTTACCNNNNNNNANNNNNNNTTATGTTA
TGTGTGATCAAGTATTTGATCCCCTCTCGTTAAGTAAATGTTAAGCATGCGTATTTGTAAACTTGTTAGTGCTATACTGA
TATGCTATCGGCCCTATCGGCGCCATTATTGCCGGGTCTTCAAATGCCACGGTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9222.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis