Browse Element(s) Details


Os.24122.1.A1_at

Description gb:AK068072.1
DB_XREF= gi:32978090
TID=Os.24122.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24122 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013131A18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013131A18, full insert sequence.
FL= gb:AK068072.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5769010/11kelch repeat-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57640Os.27579.1.A1_at10/112+35291687..35296313expressed protein
LOC_Os02g57650Os.15002.1.S1_at11/112+35297324..35301378No apical meristem protein, expressed
LOC_Os02g57660Os.26408.1.S2_at11/112+35301525..35307727Phosphatidylinositol-4-phosphate 5-kinase 9, putative, expressed
LOC_Os02g57660Os.26408.3.S1_x_at11/112+35301525..35307727Phosphatidylinositol-4-phosphate 5-kinase 9, putative, expressed
LOC_Os02g57660Os.26408.1.S1_x_at11/112+35301525..35307727Phosphatidylinositol-4-phosphate 5-kinase 9, putative, expressed
LOC_Os02g57670Os.5401.1.S1_at11/112+35314447..3531709650S ribosomal protein L9, chloroplast precursor, putative, expressed
LOC_Os02g57690Os.24122.1.A1_at10/112+35319744..35326049kelch repeat-containing protein, putative, expressed
LOC_Os02g57700OsAffx.3096.1.S1_s_at11/112+35328463..35334747U-box domain containing protein, expressed
LOC_Os02g57710Os.46745.1.S1_at11/112+35335865..35341494signal peptide peptidase family protein, expressed
LOC_Os02g57720Os.9222.1.S1_at11/112+35343804..35345571Aquaporin RWC3, putative, expressed
LOC_Os02g57730OsAffx.12682.1.S1_at11/112+35346072..35347837hypothetical protein
LOC_Os02g57740Os.8352.1.S1_at3/112+35349481..35351038hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000062molecular_functionacyl-CoA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24122.1.A1_at--357--671Chr02:35321024..35321048 (25 bp)
ATGAACTAGAAGTGTTGCGGCAACA
LOC_Os02g57690
Os.24122.1.A1_at--814--6291NONE
GATGATGAATAGTCCACCAACACCA
NONE
Os.24122.1.A1_at--260--3531Chr02:35320124..35320148 (25 bp)
CATGCAGAGCTGCTACAGTTTTGAG
LOC_Os02g57690
Os.24122.1.A1_at--934--191Chr02:35320096..35320120 (25 bp)
ATTTCTGGGTGCTCCCTCAAGATCT
LOC_Os02g57690
Os.24122.1.A1_at--372--3231Chr02:35320079..35320103 (25 bp)
CAAGATCTTGTTCGCGGTTGATTTT
LOC_Os02g57690
Os.24122.1.A1_at--1071--6031Chr02:35320054..35320078 (25 bp)
GAGATAATATCTCCCAAGACAGTCT
LOC_Os02g57690
Os.24122.1.A1_at--157--3071Chr02:35320025..35320049 (25 bp)
AATCTTCTTAAGTAGTGGCACCTGG
LOC_Os02g57690
Os.24122.1.A1_at--799--7531Chr02:35320011..35320035 (25 bp)
GTGGCACCTGGTAGAAATTTTCCAT
LOC_Os02g57690
Os.24122.1.A1_at--429--10391Chr02:35319994..35320018 (25 bp)
TTTTCCATAGGCAAGTTAGACATTC
LOC_Os02g57690
Os.24122.1.A1_at--715--6711Chr02:35319886..35319910 (25 bp)
GTTCGTCATGGCATACTTTTCTGTA
LOC_Os02g57690
Os.24122.1.A1_at--509--3571Chr02:35319875..35319899 (25 bp)
CATACTTTTCTGTAGTCGGTGTTAC
LOC_Os02g57690
Target Sequence 
ATGAACTAGAAGTGTTGCGGCAACAAATATCTCNGGTGGAGCAAACCATGACAACTGCTCAAAGACAGAAATCTGGGGGT
GTTTGGAAGTGGGTGGCAGGAAGTGCAGAGATCTCTGATGATGAATAGTCCACCAACACCAAGACAAGCAGCTACCAAGC
AGAGAGACGCATGCAGAGCTGCTACAGTTTTGAGATAATTTCTGGGTGCTCCCTCAAGATCTTGTTCGCGGTTGATTTTG
AGATAATATCTCCCAAGACAGTCTTCTGAATCTTCTTAAGTAGTGGCACCTGGTAGAAATTTTCCATAGGCAAGTTAGAC
ATTCAATAGTAAGAGCATAACATCATACAAATATACCGAATCATTTGTATCACATTCTAGAAATAATTGATTAGTTATTA
ATTTTGTGTTCGTCATGGCATACTTTTCTGTAGTCGGTGTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24122.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis