Browse Element(s) Details


Os.27579.1.A1_at

Description gb:BX901332
DB_XREF= gi:40491074
DB_XREF=BX901332
CLONE=p497f07p3
TID=Os.27579.1
CNT=13
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.27579 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T48439 (A.thaliana) T48439 probable RNA-binding protein - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5764010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57590Os.53192.1.S1_s_at11/112+35265730..35268909Fibrillarin-2, putative, expressed
LOC_Os02g57590Os.47666.1.S1_at11/112+35265730..35268909Fibrillarin-2, putative, expressed
LOC_Os02g57600Os.10392.1.S1_at11/112+35269321..35272692expressed protein
LOC_Os02g57600OsAffx.31551.1.S1_at1/112+35269321..35272692expressed protein
LOC_Os02g57610Os.19574.1.S1_at11/112+35274698..35278609hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g57620Os.19186.1.S1_at11/112+35280919..35284836expressed protein
LOC_Os02g57630Os.7211.1.S1_a_at11/112+35287543..35290686Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g57640Os.27579.1.A1_at10/112+35291687..35296313expressed protein
LOC_Os02g57650Os.15002.1.S1_at11/112+35297324..35301378No apical meristem protein, expressed
LOC_Os02g57660Os.26408.1.S2_at11/112+35301525..35307727Phosphatidylinositol-4-phosphate 5-kinase 9, putative, expressed
LOC_Os02g57660Os.26408.3.S1_x_at11/112+35301525..35307727Phosphatidylinositol-4-phosphate 5-kinase 9, putative, expressed
LOC_Os02g57660Os.26408.1.S1_x_at11/112+35301525..35307727Phosphatidylinositol-4-phosphate 5-kinase 9, putative, expressed
LOC_Os02g57670Os.5401.1.S1_at11/112+35314447..3531709650S ribosomal protein L9, chloroplast precursor, putative, expressed
LOC_Os02g57690Os.24122.1.A1_at10/112+35319744..35326049kelch repeat-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27579.1.A1_at--655--2671Chr02:35295260..35295283 (24 bp)
AAGCCCAGTACACCTATGAGATCAC
LOC_Os02g57640
Os.27579.1.A1_at--1067--2991Chr02:35295292..35295316 (25 bp)
AATGATGCCCAAGATTCTCTCACTA
LOC_Os02g57640
Os.27579.1.A1_at--778--6572Chr02:35295304..35295328 (25 bp)
GATTCTCTCACTATTGGTATTGCTG
LOC_Os02g57640
Os.27579.1.A1_at--142--9871Chr01:19629616..19629640 (25 bp)
TACAGAGATCATTCAGGCTAGTGGT
NONE
Os.27579.1.A1_at--722--3591Chr02:35295760..35295781 (22 bp)
CATTGCTGGCACATCTGAGAGGAAA
LOC_Os02g57640
Os.27579.1.A1_at--11--3431Chr02:35295961..35295985 (25 bp)
CAGAGGGTGACAGCCAGTTCCGAGA
LOC_Os02g57640
Os.27579.1.A1_at--675--9533Chr02:35296075..35296099 (25 bp)
TCTAGTTTTAGCACTATCCGCAAAA
LOC_Os02g57640
Os.27579.1.A1_at--1003--432Chr02:35296125..35296149 (25 bp)
ATCTATTGTTCCTTATTGAGTCTGA
LOC_Os02g57640
Os.27579.1.A1_at--1057--6932Chr02:35296167..35296191 (25 bp)
GTAGTCAGTCAATCAGCTGTTCTAT
LOC_Os02g57640
Os.27579.1.A1_at--25--2111Chr02:35296232..35296256 (25 bp)
ACATGTTTGGCTGTTGTCATAACTC
LOC_Os02g57640
Os.27579.1.A1_at--890--7111Chr02:35296247..35296271 (25 bp)
GTCATAACTCAACAACGCTGGTGTG
LOC_Os02g57640
Target Sequence 
AAGCCCAGTACACCTATGAGATCACCTGCTAACAATGATGCCCAAGATTCTCTCACTATTGGTATTGCTGATGAACATAT
TGGTGCTGTCNTAGGACGTGCCGGAAGGAACATTACAGAGATCATTCAGGCTAGTGGTGCCAGGATCAAGATATCTGATA
GGGGTGACTTCATTGCTGGCACATCTGAGAGGAAAGTGACGATAACTGGAACATCAGAAGCTATTCAGGCAGCAGAGTCT
ATGATAATGCAGAGGGTGACAGCCAGTTCCGAGAGGTGATAAAATCTCATGAAGACGAGGGGCATCATCTGATGGAAAAG
AAGCCTGATGCCAAGTTAGGAGGAGGGGTTGGAGATTGTCTTTTCTAGTTTTAGCACTATCCGCAAAAAAAGCTTGAGAG
AAAATTTAAGATAATCTATTGTTCCTTATTGAGTCTGATTGTGTTAGTAACTGGAGTAGTCAGTCAATCAGCTGTTCTAT
TTATTTCTTATTTTTGTTGGGAATAGGATTATATTTCACAACATGTTTGGCTGTTGTCATAACTCAACAACGCTGGTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27579.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis