Browse Element(s) Details


Os.19186.1.S1_at

Description gb:AK065330.1
DB_XREF= gi:32975348
TID=Os.19186.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19186 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013049H16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000A03, full insert sequence.
FL= gb:AK065330.1 gb:AK099610.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5762011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57550OsAffx.12680.1.S1_at11/112+35255389..35255976hypothetical protein
LOC_Os02g57560Os.49855.1.S1_at11/112+35257337..35259524Protein kinase domain containing protein, expressed
LOC_Os02g57560OsAffx.30454.1.S1_x_at1/112+35257337..35259524Protein kinase domain containing protein, expressed
LOC_Os02g57570OsAffx.24906.1.S1_x_at11/112+35261791..35262961MatE family protein
LOC_Os02g57570OsAffx.24906.1.S1_at11/112+35261791..35262961MatE family protein
LOC_Os02g57580OsAffx.24907.1.S1_at11/112+35263349..35264388hypothetical protein
LOC_Os02g57580Os.9626.2.S1_x_at1/112+35263349..35264388hypothetical protein
LOC_Os02g57590Os.53192.1.S1_s_at11/112+35265730..35268909Fibrillarin-2, putative, expressed
LOC_Os02g57590Os.47666.1.S1_at11/112+35265730..35268909Fibrillarin-2, putative, expressed
LOC_Os02g57600Os.10392.1.S1_at11/112+35269321..35272692expressed protein
LOC_Os02g57600OsAffx.31551.1.S1_at1/112+35269321..35272692expressed protein
LOC_Os02g57610Os.19574.1.S1_at11/112+35274698..35278609hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g57620Os.19186.1.S1_at11/112+35280919..35284836expressed protein
LOC_Os02g57630Os.7211.1.S1_a_at11/112+35287543..35290686Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g57640Os.27579.1.A1_at10/112+35291687..35296313expressed protein
LOC_Os02g57650Os.15002.1.S1_at11/112+35297324..35301378No apical meristem protein, expressed
LOC_Os02g57660Os.26408.1.S2_at11/112+35301525..35307727Phosphatidylinositol-4-phosphate 5-kinase 9, putative, expressed
LOC_Os02g57660Os.26408.3.S1_x_at11/112+35301525..35307727Phosphatidylinositol-4-phosphate 5-kinase 9, putative, expressed
LOC_Os02g57660Os.26408.1.S1_x_at11/112+35301525..35307727Phosphatidylinositol-4-phosphate 5-kinase 9, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19186.1.S1_at--1126--1511Chr02:35284240..35284264 (25 bp)
AGCAGAGACCAATGCCTGGCTCATC
LOC_Os02g57620
Os.19186.1.S1_at--970--4151Chr02:35284312..35284336 (25 bp)
CGCCGCGAACTTGATCGTTTGCGAG
LOC_Os02g57620
Os.19186.1.S1_at--264--1491Chr02:35284335..35284359 (25 bp)
AGCAAGCTCGCAGGTCGGAGCAGTA
LOC_Os02g57620
Os.19186.1.S1_at--451--7191Chr02:35284348..35284372 (25 bp)
GTCGGAGCAGTACGGATACACCCTC
LOC_Os02g57620
Os.19186.1.S1_at--252--7911Chr02:35284425..35284449 (25 bp)
GGATTGGCCTACTGCTCATCAGAAG
LOC_Os02g57620
Os.19186.1.S1_at--819--7811Chr02:35284529..35284553 (25 bp)
GGTCAGGTCGATTGTATTTCTGCAA
LOC_Os02g57620
Os.19186.1.S1_at--804--2431Chr02:35284577..35284601 (25 bp)
AAAATGTCTATCTTTGCCTCGGAAT
LOC_Os02g57620
Os.19186.1.S1_at--1137--4451Chr02:35284592..35284616 (25 bp)
GCCTCGGAATTAAGCACGGATATCA
LOC_Os02g57620
Os.19186.1.S1_at--480--1931Chr02:35284607..35284631 (25 bp)
ACGGATATCATGGTGCTTGGAGGCT
LOC_Os02g57620
Os.19186.1.S1_at--495--4931Chr02:35284621..35284645 (25 bp)
GCTTGGAGGCTTTTTGAGCTGTACA
LOC_Os02g57620
Os.19186.1.S1_at--596--10791Chr02:35284720..35284744 (25 bp)
TTGTTCAGCATTCTACTTGTAATCC
LOC_Os02g57620
Target Sequence 
AGCAGAGACCAATGCCTGGCTCATCCTGGCCTGGGTCAGCACGGTGGCCGGCAACCTCTCCCTCCTTGGCTCCGCCGCGA
ACTTGATCGTTTGCGAGCAAGCTCGCAGGTCGGAGCAGTACGGATACACCCTCTCCTTCTTCAGCCACCTCCAGTTCGGC
TTCCCGGCGACGCTCATCGTCACCGGGATTGGCCTACTGCTCATCAGAAGCAACTGAAAAATGGTACAGAACATATATAT
GAAGAAGACATGGATATCAGGACATGTACAAAAAGAATGTGAATTTTNAGGTCAGGTCGATTGTATTTCTGCAAAGATTC
AATTGTGGGATAAAAGAAAAATGTCTATCTTTGCCTCGGAATTAAGCACGGATATCATGGTGCTTGGAGGCTTTTTGAGC
TGTACATTTGTTAGTTCATATTGGGGGGAGAAGATGTATATGTTGCAGTAGCAAGGATCATAAAAGGGAAATGTATATTT
TTGTTCAGCATTCTACTTGTAATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19186.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis