Browse Element(s) Details


Os.47666.1.S1_at

Description gb:AK103477.1
DB_XREF= gi:32988686
TID=Os.47666.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47666 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033130D23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033130D23, full insert sequence.
FL= gb:AK103477.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5759011/11Fibrillarin-2, putative, expressed
LOC_Os05g083601/11Fibrillarin-2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57530Os.8423.1.S1_a_at11/112+35245712..35249336His Kinase A domain containing protein, expressed
LOC_Os02g57540Os.6282.1.S1_at11/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57540Os.7054.1.S1_a_at1/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57540Os.7054.2.S1_x_at1/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57550OsAffx.12680.1.S1_at11/112+35255389..35255976hypothetical protein
LOC_Os02g57560Os.49855.1.S1_at11/112+35257337..35259524Protein kinase domain containing protein, expressed
LOC_Os02g57560OsAffx.30454.1.S1_x_at1/112+35257337..35259524Protein kinase domain containing protein, expressed
LOC_Os02g57570OsAffx.24906.1.S1_x_at11/112+35261791..35262961MatE family protein
LOC_Os02g57570OsAffx.24906.1.S1_at11/112+35261791..35262961MatE family protein
LOC_Os02g57580OsAffx.24907.1.S1_at11/112+35263349..35264388hypothetical protein
LOC_Os02g57580Os.9626.2.S1_x_at1/112+35263349..35264388hypothetical protein
LOC_Os02g57590Os.53192.1.S1_s_at11/112+35265730..35268909Fibrillarin-2, putative, expressed
LOC_Os02g57590Os.47666.1.S1_at11/112+35265730..35268909Fibrillarin-2, putative, expressed
LOC_Os02g57600Os.10392.1.S1_at11/112+35269321..35272692expressed protein
LOC_Os02g57600OsAffx.31551.1.S1_at1/112+35269321..35272692expressed protein
LOC_Os02g57610Os.19574.1.S1_at11/112+35274698..35278609hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g57620Os.19186.1.S1_at11/112+35280919..35284836expressed protein
LOC_Os02g57630Os.7211.1.S1_a_at11/112+35287543..35290686Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g57640Os.27579.1.A1_at10/112+35291687..35296313expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0001510biological_processRNA methylation
GO:0006364biological_processrRNA processing
GO:0007623biological_processcircadian rhythm
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0003723molecular_functionRNA binding
GO:0005488molecular_functionbinding
GO:0030515molecular_functionsnoRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47666.1.S1_at--148--9891Chr02:35268204..35268228 (25 bp)
TACTTGCAGTAGTTTCTATAAGGTT
LOC_Os02g57590
Os.47666.1.S1_at--1115--3671Chr02:35268219..35268243 (25 bp)
CTATAAGGTTGCTGCTCGAGTTAAG
LOC_Os02g57590
Os.47666.1.S1_at--610--10791Chr02:35268251..35268275 (25 bp)
TTGTATCCCATAAAATTACCTTTAT
LOC_Os02g57590
Os.47666.1.S1_at--11--10111Chr02:35268273..35268297 (25 bp)
TATGGAATCTTCCTTGGCATGTCCC
LOC_Os02g57590
Os.47666.1.S1_at--827--9231Chr02:35268283..35268307 (25 bp)
TCCTTGGCATGTCCCTGTGTTAAAA
LOC_Os02g57590
Os.47666.1.S1_at--663--4971Chr02:35268289..35268313 (25 bp)
GCATGTCCCTGTGTTAAAAATCGTG
LOC_Os02g57590
Os.47666.1.S1_at--462--471Chr02:35268308..35268332 (25 bp)
ATCGTGAAGGTTCTCACAGAATTCA
LOC_Os02g57590
Os.47666.1.S1_at--1076--7891Chr02:35268316..35268340 (25 bp)
GGTTCTCACAGAATTCAGTTTTGAA
LOC_Os02g57590
Os.47666.1.S1_at--483--10751Chr02:35268336..35268360 (25 bp)
TTGAAACCGTTTGCAATTTTAATCT
LOC_Os02g57590
Os.47666.1.S1_at--1119--3091Chr02:35268350..35268374 (25 bp)
AATTTTAATCTTCTACTACCCTGCA
LOC_Os02g57590
Os.47666.1.S1_at--74--9912Chr05:4539693..4539929 (25 bp)
TACTACCCTGCAGGCTAGGATCTTA
LOC_Os05g08360
Target Sequence 
TACTTGCAGTAGTTTCTATAAGGTTGCTGCTCGAGTTAAGAGATAATTTGTATCCCATAAAATTACCTTTATGGAATCTT
CCTTGGCATGTCCCTGTGTTAAAAATCGTGAAGGTTCTCACAGAATTCAGTTTTGAAACCGTTTGCAATTTTAATCTTCT
ACTACCCTGCAGGCTAGGATCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47666.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis