Browse Element(s) Details


Os.7211.1.S1_a_at

Description gb:AK069150.1
DB_XREF= gi:32979174
TID=Os.7211.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.7211 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004L19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004L19, full insert sequence.
FL= gb:AK069150.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5763011/11Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57570OsAffx.24906.1.S1_x_at11/112+35261791..35262961MatE family protein
LOC_Os02g57570OsAffx.24906.1.S1_at11/112+35261791..35262961MatE family protein
LOC_Os02g57580OsAffx.24907.1.S1_at11/112+35263349..35264388hypothetical protein
LOC_Os02g57580Os.9626.2.S1_x_at1/112+35263349..35264388hypothetical protein
LOC_Os02g57590Os.53192.1.S1_s_at11/112+35265730..35268909Fibrillarin-2, putative, expressed
LOC_Os02g57590Os.47666.1.S1_at11/112+35265730..35268909Fibrillarin-2, putative, expressed
LOC_Os02g57600Os.10392.1.S1_at11/112+35269321..35272692expressed protein
LOC_Os02g57600OsAffx.31551.1.S1_at1/112+35269321..35272692expressed protein
LOC_Os02g57610Os.19574.1.S1_at11/112+35274698..35278609hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g57620Os.19186.1.S1_at11/112+35280919..35284836expressed protein
LOC_Os02g57630Os.7211.1.S1_a_at11/112+35287543..35290686Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g57640Os.27579.1.A1_at10/112+35291687..35296313expressed protein
LOC_Os02g57650Os.15002.1.S1_at11/112+35297324..35301378No apical meristem protein, expressed
LOC_Os02g57660Os.26408.1.S2_at11/112+35301525..35307727Phosphatidylinositol-4-phosphate 5-kinase 9, putative, expressed
LOC_Os02g57660Os.26408.3.S1_x_at11/112+35301525..35307727Phosphatidylinositol-4-phosphate 5-kinase 9, putative, expressed
LOC_Os02g57660Os.26408.1.S1_x_at11/112+35301525..35307727Phosphatidylinositol-4-phosphate 5-kinase 9, putative, expressed
LOC_Os02g57670Os.5401.1.S1_at11/112+35314447..3531709650S ribosomal protein L9, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005622cellular_componentintracellular
GO:0004221molecular_functionubiquitin thiolesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7211.1.S1_a_at--235--2071Chr02:35290107..35290131 (25 bp)
ACTTGCAGAGGTGACATCAGCCATT
LOC_Os02g57630
Os.7211.1.S1_a_at--977--5371Chr02:35290203..35290227 (25 bp)
GAAGCACAACTACATTCCCTTTCTA
LOC_Os02g57630
Os.7211.1.S1_a_at--492--10651Chr02:35290217..35290241 (25 bp)
TTCCCTTTCTATTCAACTTTCTCAA
LOC_Os02g57630
Os.7211.1.S1_a_at--977--5291Chr02:35290296..35290320 (25 bp)
GAAGGCTTCCAGCACAAGCACGAGT
LOC_Os02g57630
Os.7211.1.S1_a_at--1091--2851Chr02:35290334..35290358 (25 bp)
AAGTGCCACCAATGGCTGTACCGAA
LOC_Os02g57630
Os.7211.1.S1_a_at--1121--4711Chr02:35290348..35290372 (25 bp)
GCTGTACCGAATTCGTTGGTTCTCA
LOC_Os02g57630
Os.7211.1.S1_a_at--525--6791Chr02:35290440..35290464 (25 bp)
GTTATGCTATCAGATACGGCACCTT
LOC_Os02g57630
Os.7211.1.S1_a_at--338--1931Chr02:35290455..35290479 (25 bp)
ACGGCACCTTGTTGGCAGCTTAGAG
LOC_Os02g57630
Os.7211.1.S1_a_at--623--111Chr02:35290508..35290532 (25 bp)
ATTCTCTTTAATCTTTTTCTCCGTG
LOC_Os02g57630
Os.7211.1.S1_a_at--438--10431Chr02:35290541..35290565 (25 bp)
TTATCTGTTATGACTTTCTGCCCTT
LOC_Os02g57630
Os.7211.1.S1_a_at--295--2051Chr02:35290553..35290577 (25 bp)
ACTTTCTGCCCTTGTGTGATGGATA
LOC_Os02g57630
Target Sequence 
ACTTGCAGAGGTGACATCAGCCATTGAGACTGTCAGCGAGAAGATTATCATGGAAGAAGAGAAGTTCAAGAAGTGGAGGA
CGGAGAACATCAGGAGGAAGCACAACTACATTCCCTTTCTATTCAACTTTCTCAAGATGCTGGCGGAAAAGAAGCAGCTA
AAGCCATTGGTTGAGAAGGCCAAACAACAGAAGGCTTCCAGCACAAGCACGAGTGCAAGATGAAGCCAAGTGCCACCAAT
GGCTGTACCGAATTCGTTGGTTCTCATTTTGAGGAAAGCATACGTTCATGGGTTACTGGGGTTAGTTGTTGCATTTTCCC
TTTTTGAGAATGCGTTATGCTATCAGATACGGCACCTTGTTGGCAGCTTAGAGATATCACTAAGTTAATGAACCAGAGTA
CATTCTCTTTAATCTTTTTCTCCGTGTTGTATTATTATCTGTTATGACTTTCTGCCCTTGTGTGATGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7211.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis