Browse Element(s) Details


Os.15002.1.S1_at

Description gb:AK062258.1
DB_XREF= gi:32972276
TID=Os.15002.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15002 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 20620 NAC-like protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-047-G10, full insert sequence.
FL= gb:AK062258.1 gb:AK102173.1 gb:AY224433.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5765011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57600Os.10392.1.S1_at11/112+35269321..35272692expressed protein
LOC_Os02g57600OsAffx.31551.1.S1_at1/112+35269321..35272692expressed protein
LOC_Os02g57610Os.19574.1.S1_at11/112+35274698..35278609hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g57620Os.19186.1.S1_at11/112+35280919..35284836expressed protein
LOC_Os02g57630Os.7211.1.S1_a_at11/112+35287543..35290686Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g57640Os.27579.1.A1_at10/112+35291687..35296313expressed protein
LOC_Os02g57650Os.15002.1.S1_at11/112+35297324..35301378No apical meristem protein, expressed
LOC_Os02g57660Os.26408.1.S2_at11/112+35301525..35307727Phosphatidylinositol-4-phosphate 5-kinase 9, putative, expressed
LOC_Os02g57660Os.26408.3.S1_x_at11/112+35301525..35307727Phosphatidylinositol-4-phosphate 5-kinase 9, putative, expressed
LOC_Os02g57660Os.26408.1.S1_x_at11/112+35301525..35307727Phosphatidylinositol-4-phosphate 5-kinase 9, putative, expressed
LOC_Os02g57670Os.5401.1.S1_at11/112+35314447..3531709650S ribosomal protein L9, chloroplast precursor, putative, expressed
LOC_Os02g57690Os.24122.1.A1_at10/112+35319744..35326049kelch repeat-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15002.1.S1_at--719--8711Chr02:35300862..35300886 (25 bp)
TGTCGAGGGCGACGTCTCAACCAAA
LOC_Os02g57650
Os.15002.1.S1_at--16--5451Chr02:35300899..35300923 (25 bp)
GAACCGGATACGCAGATGAGCACCA
LOC_Os02g57650
Os.15002.1.S1_at--56--1831Chr02:35300923..35300947 (25 bp)
ACGCCAATGGTGTTGCGCAGCGGCA
LOC_Os02g57650
Os.15002.1.S1_at--110--1631Chr02:35300941..35300965 (25 bp)
AGCGGCATGTATCTTTTCTTCGTAT
LOC_Os02g57650
Os.15002.1.S1_at--662--10171Chr02:35301024..35301048 (25 bp)
TATAGTAGTTTTTGTTGCCCCAGGC
LOC_Os02g57650
Os.15002.1.S1_at--615--9151Chr02:35301039..35301063 (25 bp)
TGCCCCAGGCTGTTTATTAAATTGA
LOC_Os02g57650
Os.15002.1.S1_at--888--6091Chr02:35301066..35301090 (25 bp)
GAGTCATACAGAGTCCACTCGACGT
LOC_Os02g57650
Os.15002.1.S1_at--447--6111Chr02:35301092..35301116 (25 bp)
GAGGGAACTGCCTGCGATTTGGACA
LOC_Os02g57650
Os.15002.1.S1_at--1153--6611Chr02:35301140..35301164 (25 bp)
GTTGGTATACCGTTCTGACAGTTGA
LOC_Os02g57650
Os.15002.1.S1_at--22--5551Chr02:35301224..35301248 (25 bp)
GAAACTTTTGTTGGTGGCATGTACT
LOC_Os02g57650
Os.15002.1.S1_at--966--4631Chr02:35301298..35301322 (25 bp)
GCGTTCCCCGATCGATGTAAGCTGA
LOC_Os02g57650
Target Sequence 
TGTCGAGGGCGACGTCTCAACCAAATCCATTGGTTTNGAACCGGATACGCAGATGAGCACCACGCCAATGGTGTTGCGCA
GCGGCATGTATCTTTTCTTCGTATCNGCGATGATTCTCATGTTGAGCTACAAAGTTGGGCTGTGTATCTACAGCAGGTAA
GTTATAGTAGTTTTTGTTGCCCCAGGCTGTTTATTAAATTGAAGGAGTCATACAGAGTCCACTCGACGTAGAGGGAACTG
CCTGCGATTTGGACAGTTTGGTTCTTTACATTGTTATAGTTGGTATACCGTTCTGACAGTTGAAAGATACATAGCAATAA
ACTCTGGAATTGGAGAAACTAGAGTTACACGAATTTGGTGCTGAAACTTTTGTTGGTGGCATGTACTGTATAATTTACTC
TATTTATTTATTTCACCCAATTCTGGGAGGCTGTAAGCGTTCCCCGATCGATGTAAGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15002.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis