Browse Element(s) Details


Os.5401.1.S1_at

Description gb:AK060728.1
DB_XREF= gi:32970746
TID=Os.5401.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5401 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-309-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-H06, full insert sequence.
FL= gb:AK060728.1 gb:AK071751.1 gb:AK104610.1 gb:AK058369.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5767011/1150S ribosomal protein L9, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57630Os.7211.1.S1_a_at11/112+35287543..35290686Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g57640Os.27579.1.A1_at10/112+35291687..35296313expressed protein
LOC_Os02g57650Os.15002.1.S1_at11/112+35297324..35301378No apical meristem protein, expressed
LOC_Os02g57660Os.26408.1.S2_at11/112+35301525..35307727Phosphatidylinositol-4-phosphate 5-kinase 9, putative, expressed
LOC_Os02g57660Os.26408.3.S1_x_at11/112+35301525..35307727Phosphatidylinositol-4-phosphate 5-kinase 9, putative, expressed
LOC_Os02g57660Os.26408.1.S1_x_at11/112+35301525..35307727Phosphatidylinositol-4-phosphate 5-kinase 9, putative, expressed
LOC_Os02g57670Os.5401.1.S1_at11/112+35314447..3531709650S ribosomal protein L9, chloroplast precursor, putative, expressed
LOC_Os02g57690Os.24122.1.A1_at10/112+35319744..35326049kelch repeat-containing protein, putative, expressed
LOC_Os02g57700OsAffx.3096.1.S1_s_at11/112+35328463..35334747U-box domain containing protein, expressed
LOC_Os02g57710Os.46745.1.S1_at11/112+35335865..35341494signal peptide peptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0000311cellular_componentplastid large ribosomal subunit
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5401.1.S1_at--866--2671Chr02:35315123..35315147 (25 bp)
AAGCGTCTCGTGACAGTGCCAGAAA
LOC_Os02g57670
Os.5401.1.S1_at--371--3591Chr02:35315079..35315103 (25 bp)
CATTGCAGAGATTAAGCTTCACCCT
LOC_Os02g57670
Os.5401.1.S1_at--181--9671Chr02:35315061..35315085 (25 bp)
TCACCCTGAAGTCACAGCTCAAGTA
LOC_Os02g57670
Os.5401.1.S1_at--209--7071Chr02:35315039..35315063 (25 bp)
GTAAGGCTGACCGTATATGCGAAAT
LOC_Os02g57670
Os.5401.1.S1_at--160--5551Chr02:35314819..35314843 (25 bp)
GAAACTCCAAGGTGCAGTGTCACAT
LOC_Os02g57670
Os.5401.1.S1_at--68--7591Chr02:35314790..35314814 (25 bp)
GGGCTTGGTCTTTACACATTGCCAC
LOC_Os02g57670
Os.5401.1.S1_at--1092--1851Chr02:35314767..35314791 (25 bp)
ACTGTCCATCCTACCTGTAAAGTCA
LOC_Os02g57670
Os.5401.1.S1_at--877--7031Chr02:35314751..35314775 (25 bp)
GTAAAGTCAGTTTCTTGCACCTTTT
LOC_Os02g57670
Os.5401.1.S1_at--447--5951Chr02:35314648..35314672 (25 bp)
GAGCAACTGATACTTGTCTTGTAAT
LOC_Os02g57670
Os.5401.1.S1_at--894--1031Chr02:35314614..35314638 (25 bp)
AGGTGCACGTTCTTTATAGTCATAT
LOC_Os02g57670
Os.5401.1.S1_at--583--7791Chr02:35314505..35314529 (25 bp)
GGTCGCTGTATTATTAGGCCCAAAC
LOC_Os02g57670
Target Sequence 
AAGCGTCTCGTGACAGTGCCAGAAATTCGTGAAATTGGGGAATACATTGCAGAGATTAAGCTTCACCCTGAAGTCACAGC
TCAAGTAAGGCTGACCGTATATGCGAAATAAGCCCTGAAGCTGCTTGATTGAATCTTTAGTGGATGGTGGGCTTTGGATG
AATTCTGATTTCACCAGAGATTTTTGCTGAAACTCCAAGGTGCAGTGTCACATCACGGGGCTTGGTCTTTACACATTGCC
ACTGTCCATCCTACCTGTAAAGTCAGTTTCTTGCACCTTTTTTTTTTTGACAAATTTATTTGTGTTAATGTTATGGGGTT
AAATGGGCATGATGTAAACAACAAAGGGTTCAGAGTCTAGAGCAACTGATACTTGTCTTGTAATCTTGTTTAAAGGTGCA
CGTTCTTTATAGTCATATAGTTTGATAGAGCTACTACAATATTTGGGTTGGGTGGGCCAAAATGGCACGTAGGCAGTCTG
GTGGTCGTAGGTTGGGCCGCTTGGTCGCTGTATTATTAGGCCCAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5401.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis