Browse Element(s) Details


OsAffx.12682.1.S1_at

Description tigr:9630.m05756
TID=OsAffx.12682.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5773011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57690Os.24122.1.A1_at10/112+35319744..35326049kelch repeat-containing protein, putative, expressed
LOC_Os02g57700OsAffx.3096.1.S1_s_at11/112+35328463..35334747U-box domain containing protein, expressed
LOC_Os02g57710Os.46745.1.S1_at11/112+35335865..35341494signal peptide peptidase family protein, expressed
LOC_Os02g57720Os.9222.1.S1_at11/112+35343804..35345571Aquaporin RWC3, putative, expressed
LOC_Os02g57730OsAffx.12682.1.S1_at11/112+35346072..35347837hypothetical protein
LOC_Os02g57740Os.8352.1.S1_at3/112+35349481..35351038hypothetical protein
LOC_Os02g57750Os.17210.1.S1_at11/112+35357005..35363032expressed protein
LOC_Os02g57760Os.54406.1.S1_at9/112+35364662..35367650O-methyltransferase family protein, expressed
LOC_Os02g57764NANA2+35367655..35367987expressed protein
LOC_Os02g57770OsAffx.12683.1.S1_at11/112+35370866..35372888Glycosyl hydrolases family 16 protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12682.1.S1_at--1039--3612Chr04:14686920..14686944 (25 bp)
CTTGTATTAAGAGAGGCTAAGGCTC
NONE
OsAffx.12682.1.S1_at--481--6013Chr06:10692797..10692951 (25 bp)
GAGAGGCTAAGGCTCTGAAATTAAG
NONE
OsAffx.12682.1.S1_at--827--9771Chr02:35347752..35347776 (25 bp)
TAAGAGAAAAGGCTCGTTCCAGATC
LOC_Os02g57730
OsAffx.12682.1.S1_at--802--5971Chr02:35347749..35347773 (25 bp)
GAGAAAAGGCTCGTTCCAGATCTAG
LOC_Os02g57730
OsAffx.12682.1.S1_at--490--5511Chr02:35347747..35347771 (25 bp)
GAAAAGGCTCGTTCCAGATCTAGAA
LOC_Os02g57730
OsAffx.12682.1.S1_at--1115--2292Chr08:20449927..20450427 (25 bp)
AAAGGCTCGTTCCAGATCTAGAAGA
NONE
OsAffx.12682.1.S1_at--738--8316Chr07:28472237..28472256 (20 bp)
GGCTCGTTCCAGATCTAGAAGAGAA
NONE
OsAffx.12682.1.S1_at--637--3031Chr02:35347709..35347733 (25 bp)
AATCGAGACAAAATTAAGTGGGAGG
LOC_Os02g57730
OsAffx.12682.1.S1_at--1035--8631Chr02:35346162..35346593 (25 bp)
TGTGGAGGTCTAAAACTGGACTTCC
LOC_Os02g57730
OsAffx.12682.1.S1_at--586--6111Chr02:35346158..35346181 (24 bp)
GAGGTCTAAAACTGGACTTCCAAGT
LOC_Os02g57730
OsAffx.12682.1.S1_at--206--1951Chr02:35346148..35346172 (25 bp)
ACTGGACTTCCAAGTAAAGCGTATT
LOC_Os02g57730
Target Sequence 
CTTGTATTAAGAGAGGCTAAGGCTCTGAAATTAAGAGAAAAGGCTCGTTCCAGATCTAGAAGAGAAGCAAGCAAAATCGA
GACAAAATTAAGTGGGAGGAAGACACAGATGGATGAGAAAGAGAAATGTGGAGGTCTAAAACTGGACTTCCAAGTAAAGC
GTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12682.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis