Browse Element(s) Details


Os.50248.1.S1_at

Description gb:AK120318.1
DB_XREF= gi:37989941
TID=Os.50248.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50248 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013056G01, full insert sequence.
FL= gb:AK120318.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5778011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57740Os.8352.1.S1_at3/112+35349481..35351038hypothetical protein
LOC_Os02g57750Os.17210.1.S1_at11/112+35357005..35363032expressed protein
LOC_Os02g57760Os.54406.1.S1_at9/112+35364662..35367650O-methyltransferase family protein, expressed
LOC_Os02g57764NANA2+35367655..35367987expressed protein
LOC_Os02g57770OsAffx.12683.1.S1_at11/112+35370866..35372888Glycosyl hydrolases family 16 protein
LOC_Os02g57780Os.50248.1.S1_at11/112+35373509..35378628expressed protein
LOC_Os02g57790OsAffx.24908.1.S1_at11/112+35383735..35384718Zinc finger, C2H2 type family protein
LOC_Os02g57800OsAffx.12684.1.S1_at10/112+35392089..35397227expressed protein
LOC_Os02g57810NANA2+35403554..35405149Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50248.1.S1_at--247--7691Chr02:35378447..35378471 (25 bp)
GGTGTCAGGTAAAATTTCACTGTTG
LOC_Os02g57780
Os.50248.1.S1_at--544--6871Chr02:35378471..35378495 (25 bp)
GTATATTAATAGATGTTCCACGACA
LOC_Os02g57780
Os.50248.1.S1_at--547--1311Chr02:35378481..35378505 (25 bp)
AGATGTTCCACGACAATTCGCCTTT
LOC_Os02g57780
Os.50248.1.S1_at--225--5611Chr02:35378492..35378516 (25 bp)
GACAATTCGCCTTTGTCTCAGAATT
LOC_Os02g57780
Os.50248.1.S1_at--332--8731Chr02:35378505..35378529 (25 bp)
TGTCTCAGAATTTTAGTCCCATGAG
LOC_Os02g57780
Os.50248.1.S1_at--898--10331Chr02:35378516..35378540 (25 bp)
TTTAGTCCCATGAGTTAGTCCGTTT
LOC_Os02g57780
Os.50248.1.S1_at--271--7231Chr02:35378520..35378544 (25 bp)
GTCCCATGAGTTAGTCCGTTTTAGC
LOC_Os02g57780
Os.50248.1.S1_at--891--6711Chr02:35378529..35378553 (25 bp)
GTTAGTCCGTTTTAGCATGTAATGG
LOC_Os02g57780
Os.50248.1.S1_at--359--3431Chr02:35378544..35378568 (25 bp)
CATGTAATGGTTTAGGCTTTTAGTC
LOC_Os02g57780
Os.50248.1.S1_at--874--10051Chr02:35378564..35378588 (25 bp)
TAGTCAGTCTAAATGCTGCTGTACT
LOC_Os02g57780
Os.50248.1.S1_at--512--9111Chr02:35378577..35378601 (25 bp)
TGCTGCTGTACTGTTGGGCATAATA
LOC_Os02g57780
Target Sequence 
GGTGTCAGGTAAAATTTCACTGTTGTATATTAATAGATGTTCCACGACAATTCGCCTTTGTCTCAGAATTTTAGTCCCAT
GAGTTAGTCCGTTTTAGCATGTAATGGTTTAGGCTTTTAGTCAGTCTAAATGCTGCTGTACTGTTGGGCATAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50248.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis