Browse Element(s) Details


OsAffx.24908.1.S1_at

Description tigr:9630.m05764
TID=OsAffx.24908.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to ZPT2-11
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5779011/11Zinc finger, C2H2 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57750Os.17210.1.S1_at11/112+35357005..35363032expressed protein
LOC_Os02g57760Os.54406.1.S1_at9/112+35364662..35367650O-methyltransferase family protein, expressed
LOC_Os02g57764NANA2+35367655..35367987expressed protein
LOC_Os02g57770OsAffx.12683.1.S1_at11/112+35370866..35372888Glycosyl hydrolases family 16 protein
LOC_Os02g57780Os.50248.1.S1_at11/112+35373509..35378628expressed protein
LOC_Os02g57790OsAffx.24908.1.S1_at11/112+35383735..35384718Zinc finger, C2H2 type family protein
LOC_Os02g57800OsAffx.12684.1.S1_at10/112+35392089..35397227expressed protein
LOC_Os02g57810NANA2+35403554..35405149Cytochrome P450 family protein
LOC_Os02g57820Os.14536.1.S1_at11/112+35409399..35413595AT hook motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24908.1.S1_at--337--7311Chr02:35384109..35384133 (25 bp)
GTGCTGAGCCTGAACAACGTGGCCG
LOC_Os02g57790
OsAffx.24908.1.S1_at--1122--8911Chr02:35384105..35384129 (25 bp)
TGAGCCTGAACAACGTGGCCGCCGC
LOC_Os02g57790
OsAffx.24908.1.S1_at--510--4531Chr02:35384085..35384109 (25 bp)
GCCGCCGGCAGCATAATCAACAAGC
LOC_Os02g57790
OsAffx.24908.1.S1_at--939--1531Chr02:35384076..35384100 (25 bp)
AGCATAATCAACAAGCTGAGGGTGC
LOC_Os02g57790
OsAffx.24908.1.S1_at--1102--5091Chr02:35384053..35384077 (25 bp)
GCACGAGTGCTCGATATGCGGCGCC
LOC_Os02g57790
OsAffx.24908.1.S1_at--697--8171Chr02:35383896..35383920 (25 bp)
GGAAGCACGAGCATCAACCTGGAGC
LOC_Os02g57790
OsAffx.24908.1.S1_at--1145--4491Chr02:35383852..35383876 (25 bp)
GCCGTCCGACGAGGAGTCCGTGTCT
LOC_Os02g57790
OsAffx.24908.1.S1_at--228--9111Chr02:35383802..35383826 (25 bp)
TGCTCCTGGCTCTCGGCGGGCAGTT
LOC_Os02g57790
OsAffx.24908.1.S1_at--266--9451Chr02:35383790..35383814 (25 bp)
TCGGCGGGCAGTTCAACGACGGCAA
LOC_Os02g57790
OsAffx.24908.1.S1_at--872--7591Chr02:35383785..35383809 (25 bp)
GGGCAGTTCAACGACGGCAAGAAGC
LOC_Os02g57790
OsAffx.24908.1.S1_at--413--2751Chr02:35383767..35383791 (25 bp)
AAGAAGCCAATTCTGCAGCTCACCG
LOC_Os02g57790
Target Sequence 
GTGCTGAGCCTGAACAACGTGGCCGCCGCCGGCAGCATAATCAACAAGCTGAGGGTGCACGAGTGCTCGATATGCGGCGC
CGAGTTCGGCTCCGGGCAGGCGCTGGGCGGCCACATGCGGCGCCACCGGCCGCTGCACGCGCCGCCGGAGCGCGCGGCGA
CCACGGCCGCCACCACCGCCGCCACCGCCACCGCCCCGGACACCAAGAAAGAGGGAAGCACGAGCATCAACCTGGAGCTC
GACCTCAACCTGCCGGCGCCGTCCGACGAGGAGTCCGTGTCTCCTCCGCCGCCGCCGCCGCCGCCGGTGCTCCTGGCTCT
CGGCGGGCAGTTCAACGACGGCAAGAAGCCAATTCTGCAGCTCACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24908.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis