Browse Element(s) Details


OsAffx.7652.1.S1_at

Description tigr:9640.m02061
TID=OsAffx.7652.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SRF-type transcription factor (DNA-binding and dimerisation domain), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2185011/11SRF-type transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g21810OsAffx.7651.1.S1_at11/1112+12273945..12275854hypothetical protein
LOC_Os12g21810Os.50737.1.S1_at1/1112+12273945..12275854hypothetical protein
LOC_Os12g21820OsAffx.19542.3.S1_x_at7/1112+12279169..12284086retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g21830NANA12+12285139..12290198retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g21840NANA12+12296279..12296542hypothetical protein
LOC_Os12g21850OsAffx.7652.1.S1_at11/1112+12300816..12301400SRF-type transcription factor family protein, expressed
LOC_Os12g21860OsAffx.19765.1.S1_at10/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.43072.1.S1_at2/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.43072.1.S1_x_at2/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.19410.2.S1_at1/1112+12303451..12308348expressed protein
LOC_Os12g21860OsAffx.3097.1.S1_x_at1/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.12010.1.S1_x_at1/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.53191.1.S1_at1/1112+12303451..12308348expressed protein
LOC_Os12g21870Os.17137.1.S1_at11/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21870OsAffx.19766.1.S1_x_at11/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21870OsAffx.19766.1.S1_at4/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21870Os.23947.1.A1_at3/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21870Os.27627.1.S1_at1/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21880OsAffx.19767.1.S1_x_at11/1112+12316858..12317606SRF-type transcription factor family protein
LOC_Os12g21890Os.23947.1.A1_at11/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.12702.1.S1_at11/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890OsAffx.19766.1.S1_x_at7/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.17137.1.S1_at1/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.27627.1.S1_at1/1112+12319021..12327551PTEN, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7652.1.S1_at--579--10791Chr12:12301213..12301237 (25 bp)
TTGTCTTCTCCCCTGCCAAGCACGT
LOC_Os12g21850
OsAffx.7652.1.S1_at--483--9431Chr12:12301063..12301087 (25 bp)
TCGGGCTGAGGCTGGCGGCAGATGA
LOC_Os12g21850
OsAffx.7652.1.S1_at--1149--8871Chr12:12301057..12301081 (25 bp)
TGAGGCTGGCGGCAGATGATACCGG
LOC_Os12g21850
OsAffx.7652.1.S1_at--399--6711Chr12:12300957..12300981 (25 bp)
GTTCTGGTGGGAGGCCGACGTGGAC
LOC_Os12g21850
OsAffx.7652.1.S1_at--120--8631Chr12:12300953..12300977 (25 bp)
TGGTGGGAGGCCGACGTGGACGCGC
LOC_Os12g21850
OsAffx.7652.1.S1_at--715--8411Chr12:12300921..12300945 (25 bp)
GGCCGAGTTGCTGGAGTTCTTCACG
LOC_Os12g21850
OsAffx.7652.1.S1_at--1122--4051Chr12:12300918..12300942 (25 bp)
CGAGTTGCTGGAGTTCTTCACGGCG
LOC_Os12g21850
OsAffx.7652.1.S1_at--926--1231Chr12:12300916..12300940 (25 bp)
AGTTGCTGGAGTTCTTCACGGCGCT
LOC_Os12g21850
OsAffx.7652.1.S1_at--736--9131Chr12:12300913..12300937 (25 bp)
TGCTGGAGTTCTTCACGGCGCTCAA
LOC_Os12g21850
OsAffx.7652.1.S1_at--961--4111Chr12:12300895..12300919 (25 bp)
CGCTCAAGAAGCTCAGGGACAACGT
LOC_Os12g21850
OsAffx.7652.1.S1_at--71--4831Chr12:12300894..12300918 (25 bp)
GCTCAAGAAGCTCAGGGACAACGTC
LOC_Os12g21850
Target Sequence 
TTGTCTTCTCCCCTGCCAAGCACGTCTACGCCTTCGGCCACCCGTCCGTCGACGCCGTTCTCCGCTCATACGCCTCCGTC
CCCGGGGAGGCCGCCGCGGTCGCACCCGTCCCCGTCCACGGCGGCAGCGGCGGCGAGGACGTCGACCTCCTCGGGCTGAG
GCTGGCGGCAGATGATACCGGGGCGCAGGTCGCGGCGGAGCATGCGCGGATGCGCGACGTCGCGGCGAGGATCGTGCAGG
CGAAGGCCGGGAGGCGGTTCTGGTGGGAGGCCGACGTGGACGCGCTCGGGGAGGCCGAGTTGCTGGAGTTCTTCACGGCG
CTCAAGAAGCTCAGGGACAACGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7652.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis