Browse Element(s) Details


OsAffx.19765.1.S1_at

Description tigr:9640.m02062
TID=OsAffx.19765.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2186010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g21820OsAffx.19542.3.S1_x_at7/1112+12279169..12284086retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g21830NANA12+12285139..12290198retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g21840NANA12+12296279..12296542hypothetical protein
LOC_Os12g21850OsAffx.7652.1.S1_at11/1112+12300816..12301400SRF-type transcription factor family protein, expressed
LOC_Os12g21860OsAffx.19765.1.S1_at10/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.43072.1.S1_at2/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.43072.1.S1_x_at2/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.19410.2.S1_at1/1112+12303451..12308348expressed protein
LOC_Os12g21860OsAffx.3097.1.S1_x_at1/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.12010.1.S1_x_at1/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.53191.1.S1_at1/1112+12303451..12308348expressed protein
LOC_Os12g21870Os.17137.1.S1_at11/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21870OsAffx.19766.1.S1_x_at11/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21870OsAffx.19766.1.S1_at4/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21870Os.23947.1.A1_at3/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21870Os.27627.1.S1_at1/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21880OsAffx.19767.1.S1_x_at11/1112+12316858..12317606SRF-type transcription factor family protein
LOC_Os12g21890Os.23947.1.A1_at11/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.12702.1.S1_at11/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890OsAffx.19766.1.S1_x_at7/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.17137.1.S1_at1/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.27627.1.S1_at1/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21900Os.56089.1.S1_at1/1112+12331075..12332472retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19765.1.S1_at--912--2971Chr12:12305378..12305399 (22 bp)
AATGGGCACCAGTTGTGCTGGTTAC
LOC_Os12g21860
OsAffx.19765.1.S1_at--239--7311Chr12:12305392..12305450 (25 bp)
GTGCTGGTTACACTCTTAATCCAAG
LOC_Os12g21860
OsAffx.19765.1.S1_at--191--9771Chr12:12305442..12305645 (25 bp)
TAATCCAAGCCACAACAAATTCGGT
LOC_Os12g21860
OsAffx.19765.1.S1_at--452--71NONE
ATTCGGTGGAACTGAACCTGGCTCT
NONE
OsAffx.19765.1.S1_at--481--3691Chr12:12305666..12306107 (25 bp)
CTATTCAGATACAGCGTGTAGGAGT
LOC_Os12g21860
OsAffx.19765.1.S1_at--421--631Chr12:12307134..12307158 (25 bp)
ATGCTCGCACCAGCATTCAGATCGA
LOC_Os12g21860
OsAffx.19765.1.S1_at--865--1951Chr12:12307307..12307331 (25 bp)
ACTGGTATCCAGATTGCCGTGTGTA
LOC_Os12g21860
OsAffx.19765.1.S1_at--1039--1231Chr12:12307317..12307341 (25 bp)
AGATTGCCGTGTGTAGTCTTCGCTC
LOC_Os12g21860
OsAffx.19765.1.S1_at--355--10694Chr12:12308260..12308284 (25 bp)
TTCCAAGAGATGTCATCAGGACGCG
LOC_Os12g21860
OsAffx.19765.1.S1_at--908--7691Chr12:12308285..12308309 (25 bp)
GGGTAAGCATGACTCCCTGAAGCAT
LOC_Os12g21860
OsAffx.19765.1.S1_at--27--691Chr12:12308293..12308317 (25 bp)
ATGACTCCCTGAAGCATGCTCCCAA
LOC_Os12g21860
Target Sequence 
AATGGGCACCAGTTGTGCTGGTTACACTCTTAATCCAAGCCACAACAAATTCGGTGGAACTGAACCTGGCTCTTTCTATT
CAGATACAGCGTGTAGGAGTTGGAGGGTGTAGGACTGGGGTTCGCATTGCCAATGAGAGGAGGAAGACCGCCTCCAAGAG
CCTTGTCCCCATCCTGTACATGGCCGTGATGATCGTTGACATCGACCAGGATCTCTTCAGGGCGCCGTCGTGGATCTCCC
GCCATGCTCGCACCAGCATTCAGATCGACGCCACCTCGCCGATCTCCTCTGTGCCGCCGCCCACGATCCGCCATCACACA
CAAATCATCGTCGAAGATTCGCTGCCCGTCGTCGACGACTTCATCGCTGCCATCTCCGACTTCTTTGCCCTCGACCTCCG
TCACTGGGCGCCATCCACTGGTATCCAGATTGCCGTGTGTAGTCTTCGCTCCGTTCCAAGAGATGTCATCAGGACGCGGG
GTAAGCATGACTCCCTGAAGCATGCTCCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19765.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis