Browse Element(s) Details


Os.23947.1.A1_at

Description gb:AK064410.1
DB_XREF= gi:32974428
TID=Os.23947.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23947 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-A04, full insert sequence.
FL= gb:AK064410.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2189011/11PTEN, putative, expressed
LOC_Os12g218703/11intron maturase, type II family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g21840NANA12+12296279..12296542hypothetical protein
LOC_Os12g21850OsAffx.7652.1.S1_at11/1112+12300816..12301400SRF-type transcription factor family protein, expressed
LOC_Os12g21860OsAffx.19765.1.S1_at10/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.43072.1.S1_at2/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.43072.1.S1_x_at2/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.19410.2.S1_at1/1112+12303451..12308348expressed protein
LOC_Os12g21860OsAffx.3097.1.S1_x_at1/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.12010.1.S1_x_at1/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.53191.1.S1_at1/1112+12303451..12308348expressed protein
LOC_Os12g21870Os.17137.1.S1_at11/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21870OsAffx.19766.1.S1_x_at11/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21870OsAffx.19766.1.S1_at4/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21870Os.23947.1.A1_at3/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21870Os.27627.1.S1_at1/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21880OsAffx.19767.1.S1_x_at11/1112+12316858..12317606SRF-type transcription factor family protein
LOC_Os12g21890Os.23947.1.A1_at11/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.12702.1.S1_at11/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890OsAffx.19766.1.S1_x_at7/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.17137.1.S1_at1/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.27627.1.S1_at1/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21900Os.56089.1.S1_at1/1112+12331075..12332472retrotransposon protein, putative, unclassified
LOC_Os12g21910NANA12+12333606..12338741retrotransposon protein, putative, unclassified
LOC_Os12g21920OsAffx.19768.1.S1_at10/1112+12341793..12342834hypothetical protein
LOC_Os12g21930Os.54668.1.S1_at9/1112+12346798..12349721pentatricopeptide, putative, expressed
LOC_Os12g21930Os.25308.1.A1_at1/1112+12346798..12349721pentatricopeptide, putative, expressed
LOC_Os12g21940Os.54717.1.S1_at11/1112+12351717..12354198expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006278biological_processRNA-dependent DNA replication
GO:0006499biological_processN-terminal protein myristoylation
GO:0008380biological_processRNA splicing
GO:0003723molecular_functionRNA binding
GO:0003964molecular_functionRNA-directed DNA polymerase activity
GO:0016791molecular_functionphosphoric monoester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23947.1.A1_at--84--8592Chr12:12321129..12321153 (25 bp)
TGGTCATAAACCAAGTTATTGCCAA
LOC_Os12g21890
Os.23947.1.A1_at--431--3572Chr12:12321079..12321103 (25 bp)
CATATGTTAACATTGCCAAGCATTT
LOC_Os12g21890
Os.23947.1.A1_at--547--8292Chr12:12321003..12321027 (25 bp)
GGCTAGTCAGAATAGTGCATACAAA
LOC_Os12g21890
Os.23947.1.A1_at--1004--9812Chr12:12320854..12320878 (25 bp)
TAAAATCCCTTTGGGCCAAATACAT
LOC_Os12g21890
Os.23947.1.A1_at--423--7552Chr12:12320842..12320866 (25 bp)
GGGCCAAATACATACATAAGTGCTC
LOC_Os12g21890
Os.23947.1.A1_at--1047--2072Chr12:12320829..12320853 (25 bp)
ACATAAGTGCTCTTTCGCCAAAATT
LOC_Os12g21890
Os.23947.1.A1_at--754--152Chr12:12320702..12320726 (25 bp)
ATTAGTCTATTGTTGCCCATGGCAG
LOC_Os12g21890
Os.23947.1.A1_at--240--6692Chr12:12320691..12320715 (25 bp)
GTTGCCCATGGCAGATATGTTTCCT
LOC_Os12g21890
Os.23947.1.A1_at--847--852Chr12:12320684..12320708 (25 bp)
ATGGCAGATATGTTTCCTTGATGTA
LOC_Os12g21890
Os.23947.1.A1_at--665--9692Chr12:12320657..12320681 (25 bp)
TCACAGTATGATGGTCAGTTGGTCA
LOC_Os12g21890
Os.23947.1.A1_at--251--3332Chr12:12320634..12320658 (25 bp)
CACTATGTTTGTGTTGTCTGAGTAC
LOC_Os12g21890
Target Sequence 
TGGTCATAAACCAAGTTATTGCCAAATNTTGATCAAATNTACCAAATTTTCATATGTTAACATTGCCAAGCATTTTAAGT
TCAAATCAAACNCCTGTGGCCTTGNTTTTCAAGCAATTGCAGGCANGGCTAGTCAGAATAGTGCATACAAATAGATTTCA
GTGTTGAACTGTTAGTCNCATGAAAGCTGTTNTAACATNTACTGTAGAGATATGNCAATTGCAACTTAAANANAGNCGGA
AANCTGTAGGGAAGTCATGGGGCCCGAAAGGACCCTAAAATCCCTTTGGGCCAAATACATACATAAGTGCTCTTTCGCCA
AAATTNTTTCTTGCAGTCTATNTGATGTTTCNCNCATATAGAGCNCATGAGGCCCTTATCAAGCCNTGNGGCCTCAGCCT
TGTTGAACAAATTGATATTCAATAAATATTAGTCTATTGTTGCCCATGGCAGATATGTTTCCTTGATGTACATCACAGTA
TGATGGTCAGTTGGTCACTATGTTTGTGTTGTCTGAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23947.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis