Browse Element(s) Details


OsAffx.19768.1.S1_at

Description tigr:9640.m02068
TID=OsAffx.19768.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2192010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g21880OsAffx.19767.1.S1_x_at11/1112+12316858..12317606SRF-type transcription factor family protein
LOC_Os12g21890Os.23947.1.A1_at11/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.12702.1.S1_at11/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890OsAffx.19766.1.S1_x_at7/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.17137.1.S1_at1/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.27627.1.S1_at1/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21900Os.56089.1.S1_at1/1112+12331075..12332472retrotransposon protein, putative, unclassified
LOC_Os12g21910NANA12+12333606..12338741retrotransposon protein, putative, unclassified
LOC_Os12g21920OsAffx.19768.1.S1_at10/1112+12341793..12342834hypothetical protein
LOC_Os12g21930Os.54668.1.S1_at9/1112+12346798..12349721pentatricopeptide, putative, expressed
LOC_Os12g21930Os.25308.1.A1_at1/1112+12346798..12349721pentatricopeptide, putative, expressed
LOC_Os12g21940Os.54717.1.S1_at11/1112+12351717..12354198expressed protein
LOC_Os12g21950OsAffx.19769.1.S1_at11/1112+12357633..12358301hypothetical protein
LOC_Os12g21960OsAffx.19770.1.S1_at7/1112+12358727..12359772hypothetical protein
LOC_Os12g21970NANA12+12361949..12362485Transposable element protein, putative, Retrotrans_gag
LOC_Os12g21980NANA12+12364635..12366152retrotransposon, putative, centromere-specific
LOC_Os12g21990OsAffx.15648.1.S1_at1/1112+12367030..12369711retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19768.1.S1_at--51--4231Chr12:12342683..12342707 (25 bp)
CCGCTGCTGTTATCGGGAGGCCGAA
LOC_Os12g21920
OsAffx.19768.1.S1_at--140--6031NONE
GAGAGGAGTCGTTCCCAACGAACAC
NONE
OsAffx.19768.1.S1_at--434--7691Chr12:12341997..12342021 (25 bp)
GGGTATTGCCAGCAACAACTGCTAC
LOC_Os12g21920
OsAffx.19768.1.S1_at--1086--5131Chr12:12341986..12342010 (25 bp)
GCAACAACTGCTACTCAAGAATGAT
LOC_Os12g21920
OsAffx.19768.1.S1_at--718--2731Chr12:12341970..12341994 (25 bp)
AAGAATGATCATTGCGTCGGCTGCC
LOC_Os12g21920
OsAffx.19768.1.S1_at--477--7191Chr12:12341955..12341979 (25 bp)
GTCGGCTGCCTTAACAAGCGATCGC
LOC_Os12g21920
OsAffx.19768.1.S1_at--960--1631Chr12:12341939..12341963 (25 bp)
AGCGATCGCCGAATGAGTAATGCCT
LOC_Os12g21920
OsAffx.19768.1.S1_at--59--711Chr12:12341927..12341951 (25 bp)
ATGAGTAATGCCTGCGACCGCATGC
LOC_Os12g21920
OsAffx.19768.1.S1_at--148--5171Chr12:12341874..12341898 (25 bp)
GCAACCACATGCTGGCCATAAAGGA
LOC_Os12g21920
OsAffx.19768.1.S1_at--728--4711Chr12:12341864..12341888 (25 bp)
GCTGGCCATAAAGGACGGGATGTTT
LOC_Os12g21920
OsAffx.19768.1.S1_at--809--7991Chr12:12341847..12341871 (25 bp)
GGATGTTTGCGTCCTTGGTTACGCC
LOC_Os12g21920
Target Sequence 
CCGCTGCTGTTATCGGGAGGCCGAAAGGGGAGGGGAGAGAATGGGAGGAGAGGAGTCGTTCCCAACGAACACCATCACCA
CCCAACTCAGAGTCGCCGCCAAAAGCCAACTGGGGTATTGCCAGCAACAACTGCTACTCAAGAATGATCATTGCGTCGGC
TGCCTTAACAAGCGATCGCCGAATGAGTAATGCCTGCGACCGCATGCTCGCGGCGGTCATACCCTCGCCCACGGCGCAAC
CACATGCTGGCCATAAAGGACGGGATGTTTGCGTCCTTGGTTACGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19768.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis