Browse Element(s) Details


Os.27627.1.S1_at

Description gb:AK071607.1
DB_XREF= gi:32981630
TID=Os.27627.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27627 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to Oryza sativa chromosome 3, OSJNBa0077G22.24 (OSJNBa0091E23.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023102F19, full insert sequence.
FL= gb:AK060075.1 gb:AK071607.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2854010/11expressed protein
LOC_Os12g218901/11PTEN, putative, expressed
LOC_Os12g218701/11intron maturase, type II family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28474Os.31392.1.S1_at11/111+16275642..16279873Transferase family protein, expressed
LOC_Os01g28490OsAffx.8880.1.S1_at11/111+16282644..16283943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28500Os.13965.1.S1_at11/111+16285609..16286363Pathogenesis-related protein PRMS precursor, putative, expressed
LOC_Os01g28510Os.32238.1.S1_at11/111+16292971..16294510expressed protein
LOC_Os01g28520OsAffx.21119.2.S1_at11/111+16295213..16296418F-box domain containing protein
LOC_Os01g28520OsAffx.21119.1.S1_s_at11/111+16295213..16296418F-box domain containing protein
LOC_Os01g28530Os.45173.1.S1_x_at3/111+16297336..16299567retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28540Os.27627.1.S1_at10/111+16302192..16307413expressed protein
LOC_Os01g28550NANA1+16310431..16312975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28560NANA1+16313444..16314411retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28570OsAffx.23432.1.S1_at11/111+16317441..16318181pentatricopeptide, putative
LOC_Os01g28580Os.26963.1.A1_at11/111+16319625..16323710expressed protein
LOC_Os01g28580OsAffx.19810.4.S1_s_at1/111+16319625..16323710expressed protein
LOC_Os01g28590OsAffx.11244.1.S1_at11/111+16324389..16324907hypothetical protein
LOC_Os01g28600OsAffx.23433.1.S1_at11/111+16327831..16330192Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g28610OsAffx.11245.1.S1_at10/111+16331527..16333544hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006278biological_processRNA-dependent DNA replication
GO:0006499biological_processN-terminal protein myristoylation
GO:0008380biological_processRNA splicing
GO:0003723molecular_functionRNA binding
GO:0003964molecular_functionRNA-directed DNA polymerase activity
GO:0016791molecular_functionphosphoric monoester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27627.1.S1_at--369--11Chr01:16304540..16304564 (25 bp)
ATAAAAAAGGGCTCACTGAATGTGC
LOC_Os01g28540
Os.27627.1.S1_at--599--3331Chr01:16304553..16304577 (25 bp)
CACTGAATGTGCAAGCTGGGACAGC
LOC_Os01g28540
Os.27627.1.S1_at--1138--4711Chr01:16304567..16304591 (25 bp)
GCTGGGACAGCTTTTGTTGACTTTG
LOC_Os01g28540
Os.27627.1.S1_at--338--2131Chr01:16304573..16304597 (25 bp)
ACAGCTTTTGTTGACTTTGAGTTCC
LOC_Os01g28540
Os.27627.1.S1_at--323--6651Chr01:16304582..16304606 (25 bp)
GTTGACTTTGAGTTCCTTCAAGAGG
LOC_Os01g28540
Os.27627.1.S1_at--327--9251NONE
TCCTTCAAGAGGTCAATTCAGGCAA
NONE
Os.27627.1.S1_at--377--8731Chr01:16307265..16307289 (25 bp)
TGTACAAACTTTCACAATGGACTGT
LOC_Os01g28540
Os.27627.1.S1_at--1065--8391Chr01:16307282..16307306 (25 bp)
TGGACTGTACCTTTTAACTTGGGCT
LOC_Os01g28540
Os.27627.1.S1_at--975--3611Chr01:16307299..16307323 (25 bp)
CTTGGGCTTTGTATTTAGTCTGTTA
LOC_Os01g28540
Os.27627.1.S1_at--151--1151Chr01:16307315..16307339 (25 bp)
AGTCTGTTAGCAGGAAATACATGTC
LOC_Os01g28540
Os.27627.1.S1_at--1070--3053Chr01:16307342..16307366 (25 bp)
AATCATGGTTTTTATTCAGTTTCAT
LOC_Os01g28540
Target Sequence 
ATAAAAAAGGGCTCACTGAATGTGCAAGCTGGGACAGCTTTTGTTGACTTTGAGTTCCTTCAAGAGGTCAATTCAGGCAA
ACTATCTGCCACGATGTTGAACAAGTTCTCATGCATTGCCTTGGCTGGAGTAGCAACAGAGTATCTTTTGTATGGATATG
CTGAAGGAGGACTAGCTGACATTGGGCAACTAGATGGATTGCTCAAAGGTCTAGGTTTCACCCAGAAGAAAGCTGATTCA
CAGGTGAGATGGGCTGTGNTGAATACTGTACCTGCACTGCGTCGCCATAAAAAGGCCAGATCACAGCTCGCGGAGGCAAT
GTCCTCTGGGAAGTCAGTTGGATNTTGCATCGGGGTCATAGAAGAGAATATAAACTCTGAGGATATTTAGTTAGTGNCTA
TAAAGATGATGGAAAATATAGATCACATATGTACAAACTTTCACAATGGACTGTACCTTTTAACTTGGGCTTTGTATTTA
GTCTGTTAGCAGGAAATACATGTCAAAATCATGGTTTTTATTCAGTTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27627.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis