Browse Element(s) Details


OsAffx.23433.1.S1_at

Description tigr:9629.m02738
TID=OsAffx.23433.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Exo70 exocyst complex subunit
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2860011/11Exo70 exocyst complex subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28540Os.27627.1.S1_at10/111+16302192..16307413expressed protein
LOC_Os01g28550NANA1+16310431..16312975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28560NANA1+16313444..16314411retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28570OsAffx.23432.1.S1_at11/111+16317441..16318181pentatricopeptide, putative
LOC_Os01g28580Os.26963.1.A1_at11/111+16319625..16323710expressed protein
LOC_Os01g28580OsAffx.19810.4.S1_s_at1/111+16319625..16323710expressed protein
LOC_Os01g28590OsAffx.11244.1.S1_at11/111+16324389..16324907hypothetical protein
LOC_Os01g28600OsAffx.23433.1.S1_at11/111+16327831..16330192Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g28610OsAffx.11245.1.S1_at10/111+16331527..16333544hypothetical protein
LOC_Os01g28620OsAffx.23434.2.S1_x_at11/111+16334793..16346615hypothetical protein
LOC_Os01g28630Os.52782.1.S1_at1/111+16347093..16348389retrotransposon protein, putative, unclassified
LOC_Os01g28640OsAffx.8876.1.S1_at11/111+16351833..16352405retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23433.1.S1_at--1087--1111Chr01:16328314..16328338 (25 bp)
AGTGACTCAACTGATCTCATCCTTG
LOC_Os01g28600
OsAffx.23433.1.S1_at--1108--6071Chr01:16328263..16328287 (25 bp)
GAGTTTGGCACTCCAAGGGCAGCAA
LOC_Os01g28600
OsAffx.23433.1.S1_at--450--8251Chr01:16328246..16328270 (25 bp)
GGCAGCAACTGGTGTTCCTTCTGAA
LOC_Os01g28600
OsAffx.23433.1.S1_at--351--2691Chr01:16328158..16328182 (25 bp)
AAGCTGGTGCTTGCAACGCCATGTC
LOC_Os01g28600
OsAffx.23433.1.S1_at--681--10111Chr01:16328109..16328133 (25 bp)
TATGTCGAAGCTTCTTGGACACCTG
LOC_Os01g28600
OsAffx.23433.1.S1_at--345--8131Chr01:16328093..16328117 (25 bp)
GGACACCTGTGATGTCATCATTCAT
LOC_Os01g28600
OsAffx.23433.1.S1_at--528--871Chr01:16328044..16328068 (25 bp)
ATGGCCCCAGCAATTGTTCGATAAG
LOC_Os01g28600
OsAffx.23433.1.S1_at--888--1011Chr01:16327973..16327997 (25 bp)
AGGTCACGGATCCTGTGATTCGACA
LOC_Os01g28600
OsAffx.23433.1.S1_at--887--5231Chr01:16327924..16327948 (25 bp)
GAAGGTTATCCCATTGTACCGAATG
LOC_Os01g28600
OsAffx.23433.1.S1_at--808--731Chr01:16327902..16327926 (25 bp)
ATGTACTTGGAGAGCTACTCGGACA
LOC_Os01g28600
OsAffx.23433.1.S1_at--531--6151Chr01:16327861..16327885 (25 bp)
GAGGTTCAATGTTGAGCACCTTGAG
LOC_Os01g28600
Target Sequence 
AGTGACTCAACTGATCTCATCCTTGGAGTTTATGTTGGACATGAACTCTAGGAGTTTGGCACTCCAAGGGCAGCAACTGG
TGTTCCTTCTGAACAATATAAACTTCGTGCTTGAGCAAGCTAACAATTATACTGATCTGAAGCTGATTCTAGGAGAAAGC
TGGTGCTTGCAACGCCATGTCCAACTTGATCAGTTCTTGGCAAGCTATGTCGAAGCTTCTTGGACACCTGTGATGTCATC
ATTCATAATAACTCGAATTCCTAAAATTTTATGGCCCCAGCAATTGTTCGATAAGTTCAATTCTCGTTTTGAGATGACCT
ACAATGTGCAGAAGACATGGAAGGTCACGGATCCTGTGATTCGACAGAAGCTGCGTGAGAAGATCACCCAGAAGGTTATC
CCATTGTACCGAATGTACTTGGAGAGCTACTCGGACAAGAAGCAAAAGTCTGCGAGGTTCAATGTTGAGCACCTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23433.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis