Browse Element(s) Details


OsAffx.23432.1.S1_at

Description tigr:9629.m02736
TID=OsAffx.23432.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=PCMP-H2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2857011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28510Os.32238.1.S1_at11/111+16292971..16294510expressed protein
LOC_Os01g28520OsAffx.21119.2.S1_at11/111+16295213..16296418F-box domain containing protein
LOC_Os01g28520OsAffx.21119.1.S1_s_at11/111+16295213..16296418F-box domain containing protein
LOC_Os01g28530Os.45173.1.S1_x_at3/111+16297336..16299567retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28540Os.27627.1.S1_at10/111+16302192..16307413expressed protein
LOC_Os01g28550NANA1+16310431..16312975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28560NANA1+16313444..16314411retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28570OsAffx.23432.1.S1_at11/111+16317441..16318181pentatricopeptide, putative
LOC_Os01g28580Os.26963.1.A1_at11/111+16319625..16323710expressed protein
LOC_Os01g28580OsAffx.19810.4.S1_s_at1/111+16319625..16323710expressed protein
LOC_Os01g28590OsAffx.11244.1.S1_at11/111+16324389..16324907hypothetical protein
LOC_Os01g28600OsAffx.23433.1.S1_at11/111+16327831..16330192Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g28610OsAffx.11245.1.S1_at10/111+16331527..16333544hypothetical protein
LOC_Os01g28620OsAffx.23434.2.S1_x_at11/111+16334793..16346615hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23432.1.S1_at--740--4271Chr01:16318015..16318039 (25 bp)
CCTCGCTGAGTGCTTGTAGGACACA
LOC_Os01g28570
OsAffx.23432.1.S1_at--1019--3171Chr01:16317948..16317972 (25 bp)
CAATTTGACTCCTTACAGTGCATCA
LOC_Os01g28570
OsAffx.23432.1.S1_at--363--4971Chr01:16317929..16317953 (25 bp)
GCATCAACACATGTGGTGCTCTCAA
LOC_Os01g28570
OsAffx.23432.1.S1_at--773--9091Chr01:16317913..16317937 (25 bp)
TGCTCTCAAATATTTATGCCACTGT
LOC_Os01g28570
OsAffx.23432.1.S1_at--557--5231Chr01:16317796..16317820 (25 bp)
GAATAGTACATATTTTCGTTGCCAA
LOC_Os01g28570
OsAffx.23432.1.S1_at--943--4031Chr01:16317780..16317804 (25 bp)
CGTTGCCAATGATATCTCACATCCT
LOC_Os01g28570
OsAffx.23432.1.S1_at--1118--3511Chr01:16317761..16317785 (25 bp)
CATCCTAGGATCAAAGACGTGTACA
LOC_Os01g28570
OsAffx.23432.1.S1_at--341--2711Chr01:16317707..16317731 (25 bp)
AAGCTTGCAGGGTATGTTCCAGATA
LOC_Os01g28570
OsAffx.23432.1.S1_at--803--5391Chr01:16317618..16317642 (25 bp)
GAAGCTTGCACTAGCATTTGGTTTG
LOC_Os01g28570
OsAffx.23432.1.S1_at--947--3011Chr01:16317527..16317551 (25 bp)
AATGCCATCATAATCATCTCTGCCA
LOC_Os01g28570
OsAffx.23432.1.S1_at--772--651Chr01:16317475..16317499 (25 bp)
ATGCACATCGGTTCCATTGTTTCAG
LOC_Os01g28570
Target Sequence 
CCTCGCTGAGTGCTTGTAGGACACATGGAATCATGGATCTTAGAGCAAGAGCAGCCAAAGAGATTCTCAATTTGACTCCT
TACAGTGCATCAACACATGTGGTGCTCTCAAATATTTATGCCACTGTTGGCAAATGGGAGGAGGCTGCACAAATCCGGAA
ACTATTGAGAAATCGGGGAATCAGAAAGAAGCCTGGCTGCAGCTGGATAGATCTTGGCAGAATAGTACATATTTTCGTTG
CCAATGATATCTCACATCCTAGGATCAAAGACGTGTACAAATTCTTGGAGGTGATGTCAGAGAAGATGAAGCTTGCAGGG
TATGTTCCAGATAAGATATGGGCCTTGGCAAAGGATCATGCTGCCGGAGGGGAGACAAGGCTAAGGCACAATAGCAAGAA
GCTTGCACTAGCATTTGGTTTGATTAATACAGTAGAAGGAGAACCTATACTTGTGATGAAAAATCTAAGGACACGTGGAG
ACTGTCATAATGCCATCATAATCATCTCTGCCATAACTTTCAGACAGATTACTGTTAGAGATGCACATCGGTTCCATTGT
TTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23432.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis