Browse Element(s) Details


Os.32238.1.S1_at

Description gb:AK105518.1
DB_XREF= gi:32990727
TID=Os.32238.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32238 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1096D03.37 (B1096D03.37), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-F07, full insert sequence.
FL= gb:AK105518.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2851011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28460Os.24942.4.A1_x_at6/111+16272370..16273964hypothetical protein
LOC_Os01g28460Os.24942.4.A1_at3/111+16272370..16273964hypothetical protein
LOC_Os01g28474Os.31392.1.S1_at11/111+16275642..16279873Transferase family protein, expressed
LOC_Os01g28490OsAffx.8880.1.S1_at11/111+16282644..16283943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28500Os.13965.1.S1_at11/111+16285609..16286363Pathogenesis-related protein PRMS precursor, putative, expressed
LOC_Os01g28510Os.32238.1.S1_at11/111+16292971..16294510expressed protein
LOC_Os01g28520OsAffx.21119.2.S1_at11/111+16295213..16296418F-box domain containing protein
LOC_Os01g28520OsAffx.21119.1.S1_s_at11/111+16295213..16296418F-box domain containing protein
LOC_Os01g28530Os.45173.1.S1_x_at3/111+16297336..16299567retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28540Os.27627.1.S1_at10/111+16302192..16307413expressed protein
LOC_Os01g28550NANA1+16310431..16312975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28560NANA1+16313444..16314411retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28570OsAffx.23432.1.S1_at11/111+16317441..16318181pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32238.1.S1_at--1159--5731Chr01:16293444..16293468 (25 bp)
GACGGCTCCATGTGCTTGGTCAACA
LOC_Os01g28510
Os.32238.1.S1_at--393--6211Chr01:16293400..16293424 (25 bp)
GAGGCTGGTCATGTTGTCTAAGAAA
LOC_Os01g28510
Os.32238.1.S1_at--886--2431Chr01:16293376..16293400 (25 bp)
AAAATGGCACCTCAGAGTTTGGCTT
LOC_Os01g28510
Os.32238.1.S1_at--298--2771Chr01:16293275..16293299 (25 bp)
AAGACGCTGCTGATATGCTATGGGA
LOC_Os01g28510
Os.32238.1.S1_at--917--7931Chr01:16293253..16293277 (25 bp)
GGATTATGATCGAGCGTGCCGCGTT
LOC_Os01g28510
Os.32238.1.S1_at--682--9171Chr01:16293160..16293184 (25 bp)
TGCCTTTCGTCTCAGCAACTTAGAG
LOC_Os01g28510
Os.32238.1.S1_at--330--10451Chr01:16293122..16293146 (25 bp)
TTAGTGCGAGTGAGCCTGTGTTTCA
LOC_Os01g28510
Os.32238.1.S1_at--661--6831Chr01:16293103..16293127 (25 bp)
GTTTCAGTACCAGATGCCATGGCCT
LOC_Os01g28510
Os.32238.1.S1_at--280--8791Chr01:16293071..16293095 (25 bp)
TGTTGCCCACGGCTTAGCAATGAGT
LOC_Os01g28510
Os.32238.1.S1_at--191--8791Chr01:16293047..16293071 (25 bp)
TGTTATGTTGCTTCTGAGTCCACTT
LOC_Os01g28510
Os.32238.1.S1_at--323--6111Chr01:16293032..16293056 (25 bp)
GAGTCCACTTGGTTTTTGTGACCTC
LOC_Os01g28510
Target Sequence 
GACGGCTCCATGTGCTTGGTCAACATGGAGGAGAGAGGAACGATGAGGCTGGTCATGTTGTCTAAGAAAAAATGGCACCT
CAGAGTTTGGCTTCTTGGAAAGTCTGGATGCGGCGGCCGCGCGTGGGTGCTGGACCAAGAACAGGAAACATCGCTGACGA
CGTCGACCGAAGACGCTGCTGATATGCTATGGGATTATGATCGAGCGTGCCGCGTTGTCGCCGTAAACGCCGGCGTCGTG
CTGATGTGCCTCCACTCGCCACGACGCCTGAACGACCGCTACATTGCCTTTCGTCTCAGCAACTTAGAGGTTGTTGCGAG
TTTTAGTGCGAGTGAGCCTGTGTTTCAGTACCAGATGCCATGGCCTCCGGTTTTGTTGCCCACGGCTTAGCAATGAGTGT
TATGTTGCTTCTGAGTCCACTTGGTTTTTGTGACCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32238.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis