Browse Element(s) Details


OsAffx.23434.2.S1_x_at

Description tigr:9629.m02740
TID=OsAffx.23434.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2862011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28550NANA1+16310431..16312975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28560NANA1+16313444..16314411retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28570OsAffx.23432.1.S1_at11/111+16317441..16318181pentatricopeptide, putative
LOC_Os01g28580Os.26963.1.A1_at11/111+16319625..16323710expressed protein
LOC_Os01g28580OsAffx.19810.4.S1_s_at1/111+16319625..16323710expressed protein
LOC_Os01g28590OsAffx.11244.1.S1_at11/111+16324389..16324907hypothetical protein
LOC_Os01g28600OsAffx.23433.1.S1_at11/111+16327831..16330192Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g28610OsAffx.11245.1.S1_at10/111+16331527..16333544hypothetical protein
LOC_Os01g28620OsAffx.23434.2.S1_x_at11/111+16334793..16346615hypothetical protein
LOC_Os01g28630Os.52782.1.S1_at1/111+16347093..16348389retrotransposon protein, putative, unclassified
LOC_Os01g28640OsAffx.8876.1.S1_at11/111+16351833..16352405retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28650OsAffx.25778.2.S1_at9/111+16357073..16357549hypothetical protein
LOC_Os01g28660OsAffx.29218.1.S1_s_at2/111+16359956..16365764hypothetical protein
LOC_Os01g28660OsAffx.380.1.S1_at2/111+16359956..16365764hypothetical protein
LOC_Os01g28660OsAffx.2057.3.S1_at1/111+16359956..16365764hypothetical protein
LOC_Os01g28660OsAffx.13325.1.S1_at1/111+16359956..16365764hypothetical protein
LOC_Os01g28670NANA1+16368048..16369095hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23434.2.S1_x_at--286--10811Chr01:16335657..16335681 (25 bp)
TTGTTTCATCGGCTGGTCCAATACA
LOC_Os01g28620
OsAffx.23434.2.S1_x_at--552--2151Chr01:16335635..16335659 (25 bp)
ACAGCTGATGCTGTCTAACTCACCA
LOC_Os01g28620
OsAffx.23434.2.S1_x_at--504--8291Chr01:16335590..16335614 (25 bp)
GGCTATTATCCCAGCAAGCTCAAGC
LOC_Os01g28620
OsAffx.23434.2.S1_x_at--1150--8151Chr01:16335497..16335521 (25 bp)
GGAAACTCTGTTAGCGCTACATACT
LOC_Os01g28620
OsAffx.23434.2.S1_x_at--672--4111Chr01:16335483..16335507 (25 bp)
CGCTACATACTCTAGTGACACCAGT
LOC_Os01g28620
OsAffx.23434.2.S1_x_at--186--6791Chr01:16335448..16335472 (25 bp)
GTTAGGCCTCGATCAGAGCAGACAC
LOC_Os01g28620
OsAffx.23434.2.S1_x_at--296--2711Chr01:16335386..16335410 (25 bp)
AAGCTATGTTTTGTCAGTCTCTCCA
LOC_Os01g28620
OsAffx.23434.2.S1_x_at--336--311Chr01:16335361..16335385 (25 bp)
ATACCAGTCCATACCACGCAGATTT
LOC_Os01g28620
OsAffx.23434.2.S1_x_at--617--8711Chr01:16335193..16335217 (25 bp)
TGTCCCCTCCAGATGTCGAGCATAA
LOC_Os01g28620
OsAffx.23434.2.S1_x_at--1079--1571Chr01:16335085..16335109 (25 bp)
AGCTCCTACGAGATTTTCCATCTAC
LOC_Os01g28620
OsAffx.23434.2.S1_x_at--7--2791Chr01:16334948..16334971 (24 bp)
AAGAGACAGGCCTGCAACATCAGCT
LOC_Os01g28620
Target Sequence 
TTGTTTCATCGGCTGGTCCAATACAGCTGATGCTGTCTAACTCACCACCACCTTCAGAGCAAACGTTGGCTATTATCCCA
GCAAGCTCAAGCAGCTCTGTAGAGGGAGCATCAGCAGAAAGCAAAAAAAGCACTGAATCAAAGATAAAGGCCAGGGCAAA
GGAAACTCTGTTAGCGCTACATACTCTAGTGACACCAGTGAGGCATATTGTTAGGCCTCGATCAGAGCAGACACCAACTA
GCAAGCTTAATGTGCCATCATCAGGGAAGAAAAGCTATGTTTTGTCAGTCTCTCCAATACCAGTCCATACCACGCAGATT
TCATCTGACAATAAGGCAACAACTGAGGCAGAGGGCAAAGCAAAAGCTCCACAGCCAGCATCCTCTGTTGAACTGTCCCC
TCCAGATGTCGAGCATAAGGCAAAGGCAGCACACCAGCTCCTACGAGATTTTCCATCTACAGACCCATCATTACTTGCTA
AAGACATCCAGAAGAAAAGAGACAGGCCTGCAACATCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23434.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis