Browse Element(s) Details


OsAffx.19766.1.S1_at

Description tigr:9640.m02063
TID=OsAffx.19766.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Type II intron maturase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g218704/11intron maturase, type II family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g21830NANA12+12285139..12290198retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g21840NANA12+12296279..12296542hypothetical protein
LOC_Os12g21850OsAffx.7652.1.S1_at11/1112+12300816..12301400SRF-type transcription factor family protein, expressed
LOC_Os12g21860OsAffx.19765.1.S1_at10/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.43072.1.S1_at2/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.43072.1.S1_x_at2/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.19410.2.S1_at1/1112+12303451..12308348expressed protein
LOC_Os12g21860OsAffx.3097.1.S1_x_at1/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.12010.1.S1_x_at1/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.53191.1.S1_at1/1112+12303451..12308348expressed protein
LOC_Os12g21870Os.17137.1.S1_at11/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21870OsAffx.19766.1.S1_x_at11/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21870OsAffx.19766.1.S1_at4/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21870Os.23947.1.A1_at3/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21870Os.27627.1.S1_at1/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21880OsAffx.19767.1.S1_x_at11/1112+12316858..12317606SRF-type transcription factor family protein
LOC_Os12g21890Os.23947.1.A1_at11/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.12702.1.S1_at11/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890OsAffx.19766.1.S1_x_at7/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.17137.1.S1_at1/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.27627.1.S1_at1/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21900Os.56089.1.S1_at1/1112+12331075..12332472retrotransposon protein, putative, unclassified
LOC_Os12g21910NANA12+12333606..12338741retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006278biological_processRNA-dependent DNA replication
GO:0008380biological_processRNA splicing
GO:0003723molecular_functionRNA binding
GO:0003964molecular_functionRNA-directed DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19766.1.S1_at--734--9651Chr12:12313566..12313590 (25 bp)
TCAGATTCTGTTGGGCAGTGTATCA
LOC_Os12g21870
OsAffx.19766.1.S1_at--1089--10591Chr12:12313563..12313585 (23 bp)
TTCTGTTGGGCAGTGTATCAATGCA
LOC_Os12g21870
OsAffx.19766.1.S1_at--329--6631NONE
GTTGGGCAGTGTATCAATGCAAGTA
NONE
OsAffx.19766.1.S1_at--748--7431NONE
GTGTATCAATGCAAGTAAAGCCCTC
NONE
OsAffx.19766.1.S1_at--278--2151NONE
ACAGCCTTCTTCAGGCGTTCTTTTC
NONE
OsAffx.19766.1.S1_at--290--4311NONE
CCTTCTTCAGGCGTTCTTTTCACTA
NONE
OsAffx.19766.1.S1_at--676--10551NONE
TTCTTCAGGCGTTCTTTTCACTACT
NONE
OsAffx.19766.1.S1_at--261--3651Chr12:12311880..12311900 (21 bp)
CTTCAGGCGTTCTTTTCACTACTAA
LOC_Os12g21870
OsAffx.19766.1.S1_at--292--10531NONE
TTCAGGCGTTCTTTTCACTACTAAG
NONE
OsAffx.19766.1.S1_at--567--9611NONE
TCAGGCGTTCTTTTCACTACTAAGA
NONE
OsAffx.19766.1.S1_at--170--711Chr12:12311876..12311900 (25 bp)
AGGCGTTCTTTTCACTACTAAGAAG
LOC_Os12g21870
Target Sequence 
TCAGATTCTGTTGGGCAGTGTATCAATGCAAGTAAAGCCCTCTGATTCACATCCACCACCTGCTACTCCGGTGGACAGCC
AGGATTCAACCGCACCTCCTGTCAGAACTCCTGACCCTGTTTCTCAGGCTACTTCAAATGATTCTGCCACCCAGTTTGCC
AGTACATTCCATGTAGCCCCTTCACCTGCACCTGTTCCAAATGCTGTTCCAATACAAGATGCTGCAGGGCGCGAGGCACA
ATCCTCCATATTTTCTACATCTGGCTTATCCTCCTGGGCAAAAAACCTGAAAATACCACAGCCTTCTTCAGGCGTTCTTT
TCACTACTAAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19766.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis