Browse Element(s) Details


OsAffx.7653.1.S1_at

Description tigr:9640.m02077
TID=OsAffx.7653.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g220109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g21930Os.54668.1.S1_at9/1112+12346798..12349721pentatricopeptide, putative, expressed
LOC_Os12g21930Os.25308.1.A1_at1/1112+12346798..12349721pentatricopeptide, putative, expressed
LOC_Os12g21940Os.54717.1.S1_at11/1112+12351717..12354198expressed protein
LOC_Os12g21950OsAffx.19769.1.S1_at11/1112+12357633..12358301hypothetical protein
LOC_Os12g21960OsAffx.19770.1.S1_at7/1112+12358727..12359772hypothetical protein
LOC_Os12g21970NANA12+12361949..12362485Transposable element protein, putative, Retrotrans_gag
LOC_Os12g21980NANA12+12364635..12366152retrotransposon, putative, centromere-specific
LOC_Os12g21990OsAffx.15648.1.S1_at1/1112+12367030..12369711retrotransposon protein, putative, unclassified
LOC_Os12g22000OsAffx.31827.1.S1_at11/1112+12370570..12373181hypothetical protein
LOC_Os12g22000OsAffx.32278.1.A1_at2/1112+12370570..12373181hypothetical protein
LOC_Os12g22000OsAffx.13030.1.S1_x_at1/1112+12370570..12373181hypothetical protein
LOC_Os12g22010Os.50949.2.S1_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010Os.50949.1.S1_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010Os.50949.2.S1_x_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010Os.52566.1.S1_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010OsAffx.7653.1.S1_at9/1112+12373402..12379066hypothetical protein
LOC_Os12g22020OsAffx.19771.1.S1_at11/1112+12380541..12386677hypothetical protein
LOC_Os12g22020OsAffx.10906.1.S1_at2/1112+12380541..12386677hypothetical protein
LOC_Os12g22030Os.16318.1.S1_at11/1112+12390098..12393967Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os12g22030Os.46481.2.S1_x_at1/1112+12390098..12393967Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7653.1.S1_at--467--3851NONE
CTGTTGTCCACAAGGCTACCTTAGA
NONE
OsAffx.7653.1.S1_at--542--4031NONE
CGAGGTTATCCCGAGAAAATTTATG
NONE
OsAffx.7653.1.S1_at--451--10112Chr12:12375535..12375559 (25 bp)
TATGGATCTCTCTTATATTCAGGAA
LOC_Os12g22010
OsAffx.7653.1.S1_at--708--6831Chr12:12375261..12375450 (25 bp)
GTTTCACCGCATTCAATTCGTGAGC
LOC_Os12g22010
OsAffx.7653.1.S1_at--35--4011Chr12:12375243..12375267 (25 bp)
CGTGAGCGTGTCAGTTGTTTTGATC
LOC_Os12g22010
OsAffx.7653.1.S1_at--1150--9355Chr04:5044664..5044685 (22 bp)
TCGAGCTTCCGTTTTAACCGCTCTA
NONE
OsAffx.7653.1.S1_at--858--9959Chr10:5626885..5626907 (23 bp)
TAGCCAAAACTTTCCCCAATCTCTT
NONE
OsAffx.7653.1.S1_at--1152--5891Chr12:12373623..12373647 (25 bp)
GAGCTCTCCGGCGACATTTTTGAGC
LOC_Os12g22010
OsAffx.7653.1.S1_at--568--5671Chr12:12373611..12373635 (25 bp)
GACATTTTTGAGCTTTCTGGCCATC
LOC_Os12g22010
OsAffx.7653.1.S1_at--314--10311Chr12:12373598..12373622 (25 bp)
TTTCTGGCCATCTCGCAAGCGATTC
LOC_Os12g22010
OsAffx.7653.1.S1_at--1039--5151Chr12:12373584..12373608 (25 bp)
GCAAGCGATTCCTTGCTGCACCAAC
LOC_Os12g22010
Target Sequence 
CTGTTGTCCACAAGGCTACCTTAGAGTTGGAAAAAAAATCTGGGATTGCAAGAGCATTGCAAGGGAGAACTTCTGAAAAG
GAATTGTTATCGTTATCTTTAGTGCCCATATTATTTGGCTTGGGCAACTATAAGAAACTAATCAGGAAAGGTAAGCAGCT
TATTCTGCACGGTCTTAACGAGGTTATCCCGAGAAAATTTATGGATCTCTCTTATATTCAGGAAAGTGAAGCCGTTAGGT
TAATTAAACGAAGATTGTTGTACCTTGGCCCTGAAACAATTGAAGAGGGCTCTCTACTTGTGTTGAAAGTTTCACCGCAT
TCAATTCGTGAGCGTGTCAGTTGTTTTGATCCTGCAATCAACAAGAATAAAAGACAAGAAAATCGAGCTTCCGTTTTAAC
CGCTCTAGCCAAAACTTTCCCCAATCTCTTCCTCGAGCTCTCCGGCGACATTTTTGAGCTTTCTGGCCATCTCGCAAGCG
ATTCCTTGCTGCACCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7653.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis