Browse Element(s) Details


OsAffx.31473.1.S1_at

Description tigr:9639.m04128
TID=OsAffx.31473.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4451011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44450OsAffx.29789.3.S1_x_at1/1111+26389249..26390729hypothetical protein
LOC_Os11g44460NANA11+26396523..26396867hypothetical protein
LOC_Os11g44470NANA11+26400840..26401472hypothetical protein
LOC_Os11g44480NANA11+26402451..26403839retrotransposon protein, putative, unclassified
LOC_Os11g44490NANA11+26407444..26408076hypothetical protein
LOC_Os11g44500OsAffx.31472.1.S1_at11/1111+26409687..26411580Protein kinase domain containing protein, expressed
LOC_Os11g44510OsAffx.31473.1.S1_at11/1111+26414610..26414983hypothetical protein
LOC_Os11g44520OsAffx.7410.1.S1_at11/1111+26416909..26418345hypothetical protein
LOC_Os11g44530NANA11+26418728..26424578retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g44540OsAffx.32032.4.S1_s_at11/1111+26425652..26426303hypothetical protein
LOC_Os11g44550OsAffx.7411.1.S1_at11/1111+26427362..26428630Protein kinase domain containing protein
LOC_Os11g44560Os.27110.1.A1_at11/1111+26433212..26440078Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31473.1.S1_at--402--4031Chr11:26414686..26414710 (25 bp)
CGTTGCCGGCTCAGCGGAACAAGAA
LOC_Os11g44510
OsAffx.31473.1.S1_at--1153--1831Chr11:26414829..26414853 (25 bp)
ACGCTCCGGCGGTGACTAAGTACAA
LOC_Os11g44510
OsAffx.31473.1.S1_at--61--4791Chr11:26414831..26414855 (25 bp)
GCTCCGGCGGTGACTAAGTACAAAC
LOC_Os11g44510
OsAffx.31473.1.S1_at--1145--8351Chr11:26414836..26414860 (25 bp)
GGCGGTGACTAAGTACAAACTGCTA
LOC_Os11g44510
OsAffx.31473.1.S1_at--937--3271Chr11:26414851..26414875 (25 bp)
CAAACTGCTAGATGTGAACACTCGC
LOC_Os11g44510
OsAffx.31473.1.S1_at--1042--9071Chr11:26414856..26414880 (25 bp)
TGCTAGATGTGAACACTCGCACCTC
LOC_Os11g44510
OsAffx.31473.1.S1_at--675--9111Chr11:26414884..26414908 (25 bp)
TGCTGCTCTTATGGATCTTGCGGCG
LOC_Os11g44510
OsAffx.31473.1.S1_at--665--4691Chr11:26414903..26414927 (25 bp)
GCGGCGGCATGCGATCTGGGCGAAC
LOC_Os11g44510
OsAffx.31473.1.S1_at--252--491Chr11:26414916..26414940 (25 bp)
ATCTGGGCGAACGTGATTTCGATCA
LOC_Os11g44510
OsAffx.31473.1.S1_at--1127--5451Chr11:26414924..26414948 (25 bp)
GAACGTGATTTCGATCAGCTCTCCA
LOC_Os11g44510
OsAffx.31473.1.S1_at--16--8831Chr11:26414929..26414953 (25 bp)
TGATTTCGATCAGCTCTCCAAGGTG
LOC_Os11g44510
Target Sequence 
CGTTGCCGGCTCAGCGGAACAAGAAGGAGTGCGAGCAGCTCGCCCGCCGACCCGGAGGTGATGCGGCGGCCGGAGGTCCG
GCGGTCGCTGGCCGGGCTCGGCGACACGCTCCGGCGGTGACTAAGTACAAACTGCTAGATGTGAACACTCGCACCTCCCC
TGCTGCTCTTATGGATCTTGCGGCGGCATGCGATCTGGGCGAACGTGATTTCGATCAGCTCTCCAAGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31473.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis