Browse Element(s) Details


OsAffx.31472.1.S1_at

Description tigr:9639.m04127
TID=OsAffx.31472.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4450011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44440Os.47463.1.S1_x_at4/1111+26374361..26386914transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44440Os.14491.2.S1_x_at2/1111+26374361..26386914transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44440Os.27037.1.A1_at1/1111+26374361..26386914transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44450OsAffx.29789.3.S1_x_at1/1111+26389249..26390729hypothetical protein
LOC_Os11g44460NANA11+26396523..26396867hypothetical protein
LOC_Os11g44470NANA11+26400840..26401472hypothetical protein
LOC_Os11g44480NANA11+26402451..26403839retrotransposon protein, putative, unclassified
LOC_Os11g44490NANA11+26407444..26408076hypothetical protein
LOC_Os11g44500OsAffx.31472.1.S1_at11/1111+26409687..26411580Protein kinase domain containing protein, expressed
LOC_Os11g44510OsAffx.31473.1.S1_at11/1111+26414610..26414983hypothetical protein
LOC_Os11g44520OsAffx.7410.1.S1_at11/1111+26416909..26418345hypothetical protein
LOC_Os11g44530NANA11+26418728..26424578retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g44540OsAffx.32032.4.S1_s_at11/1111+26425652..26426303hypothetical protein
LOC_Os11g44550OsAffx.7411.1.S1_at11/1111+26427362..26428630Protein kinase domain containing protein
LOC_Os11g44560Os.27110.1.A1_at11/1111+26433212..26440078Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31472.1.S1_at--1009--931Chr11:26411029..26411053 (25 bp)
AGGAAGGCACTGTCTCAACGAGCGG
LOC_Os11g44500
OsAffx.31472.1.S1_at--1024--1951Chr11:26411037..26411061 (25 bp)
ACTGTCTCAACGAGCGGTGGTACTG
LOC_Os11g44500
OsAffx.31472.1.S1_at--655--6791Chr11:26411078..26411102 (25 bp)
GTTTCGCCCCCGAGAGCTTGGTGGA
LOC_Os11g44500
OsAffx.31472.1.S1_at--598--8531Chr11:26411099..26411123 (25 bp)
TGGACTTGGCGCTGCCAGTGATAAG
LOC_Os11g44500
OsAffx.31472.1.S1_at--201--4931Chr11:26411225..26411249 (25 bp)
GCTTGCTGCACGATTGGGTGAAACG
LOC_Os11g44500
OsAffx.31472.1.S1_at--322--1891Chr11:26411234..26411258 (25 bp)
ACGATTGGGTGAAACGGCCGGCCAT
LOC_Os11g44500
OsAffx.31472.1.S1_at--475--5531Chr11:26411244..26411268 (25 bp)
GAAACGGCCGGCCATCTCGGAAGTC
LOC_Os11g44500
OsAffx.31472.1.S1_at--348--8431Chr11:26411253..26411277 (25 bp)
GGCCATCTCGGAAGTCGTGGTCGAC
LOC_Os11g44500
OsAffx.31472.1.S1_at--6--1951Chr11:26411290..26411314 (25 bp)
ACGGCGGCGCTGGAAGACTCGGCTC
LOC_Os11g44500
OsAffx.31472.1.S1_at--283--4811Chr11:26411343..26411367 (25 bp)
GCTCTGCTCGGCTTTGGGCGGCAAG
LOC_Os11g44500
OsAffx.31472.1.S1_at--478--8231Chr11:26411459..26411483 (25 bp)
GGCAAGACCGGCAGCTCGAGATGGC
LOC_Os11g44500
Target Sequence 
AGGAAGGCACTGTCTCAACGAGCGGTGGTACTGAAGGATGGGTGTACGGGTTTCGCCCCCGAGAGCTTGGTGGACTTGGC
GCTGCCAGTGATAAGGTCGGGGAAGGCGCGGAAGCTTCTGGACAAACGCCTGACGCCGACGCCGAAGCGGAGGCAGCTCC
GGGCGGCGGATATGGTGGCGCGCACGGCAGCGCGCTGCTTGCTGCACGATTGGGTGAAACGGCCGGCCATCTCGGAAGTC
GTGGTCGACCTCAAGGCGGCGACGGCGGCGCTGGAAGACTCGGCTCGGCTCGGCTTCTTCTCCCTCTTCCTCGCGCTCTG
CTCGGCTTTGGGCGGCAAGGCGCCGCGGCGGCGAGGTGAAGCTCGGCGCCCGGCGGCCGGGGCGGCGGCGACCTCGGGCG
GTGCTTCGCTGGCGACGGCGGCGCTAGGAGGGCAAGACCGGCAGCTCGAGATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31472.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis