Browse Element(s) Details


OsAffx.7413.1.S1_at

Description tigr:9639.m04135
TID=OsAffx.7413.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cre3 homologue protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4458011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44530NANA11+26418728..26424578retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g44540OsAffx.32032.4.S1_s_at11/1111+26425652..26426303hypothetical protein
LOC_Os11g44550OsAffx.7411.1.S1_at11/1111+26427362..26428630Protein kinase domain containing protein
LOC_Os11g44560Os.27110.1.A1_at11/1111+26433212..26440078Protein kinase domain containing protein, expressed
LOC_Os11g44570OsAffx.7412.1.S1_at11/1111+26442992..26444385hypothetical protein
LOC_Os11g44580OsAffx.7413.1.S1_at11/1111+26446344..26448788NB-ARC domain containing protein, expressed
LOC_Os11g44590Os.50949.1.S1_at1/1111+26453294..26456554retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g44600OsAffx.31474.1.S1_at11/1111+26460730..26461576hypothetical protein
LOC_Os11g44610NANA11+26464864..26470718retrotransposon protein, putative, Ty3-gypsy subclass, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7413.1.S1_at--825--1331Chr11:26446821..26446845 (25 bp)
AGAGGTGCTTGAGGGCCTTTGCCCA
LOC_Os11g44580
OsAffx.7413.1.S1_at--1028--3671Chr11:26446805..26446829 (25 bp)
CTTTGCCCACCATTGGAGCTTGAAA
LOC_Os11g44580
OsAffx.7413.1.S1_at--781--371Chr11:26446762..26446786 (25 bp)
ATCACGGTTCAAGCTACCCAGATTG
LOC_Os11g44580
OsAffx.7413.1.S1_at--521--8811Chr11:26446735..26446759 (25 bp)
TGATCGGAGGTCACAAAGGCCCAAA
LOC_Os11g44580
OsAffx.7413.1.S1_at--1099--2831Chr11:26446712..26446736 (25 bp)
AAGTACCTGCGCGAACTTGAGCTCA
LOC_Os11g44580
OsAffx.7413.1.S1_at--475--3811Chr11:26446634..26446658 (25 bp)
CTCCGTTCACTCTGGCTTTGGAAAA
LOC_Os11g44580
OsAffx.7413.1.S1_at--374--4931Chr11:26446540..26446564 (25 bp)
GCTTGAACATTCAGTCGCTTCCAAA
LOC_Os11g44580
OsAffx.7413.1.S1_at--585--2351Chr11:26446518..26446542 (25 bp)
AAAGCTGCCCCGATCTCTTGAGGAG
LOC_Os11g44580
OsAffx.7413.1.S1_at--1116--8211Chr11:26446429..26446453 (25 bp)
GGCACAAGATCCAGCATATTCCTAG
LOC_Os11g44580
OsAffx.7413.1.S1_at--210--9071Chr11:26446395..26446419 (25 bp)
TGCTTTGGAATCTACTCATTCTCCC
LOC_Os11g44580
OsAffx.7413.1.S1_at--316--111Chr11:26446378..26446402 (25 bp)
ATTCTCCCCATGGTAGCAGCAGCAG
LOC_Os11g44580
Target Sequence 
AGAGGTGCTTGAGGGCCTTTGCCCACCATTGGAGCTTGAAAGACTAGAAATAACAGATTATCACGGTTCAAGCTACCCAG
ATTGGATGATCGGAGGTCACAAAGGCCCAAAGTACCTGCGCGAACTTGAGCTCAGTGGATGCAGCCGACTGGGACCTGCC
CCTGAACTCTTTGAGTTTTTCATTCATCTCCGTTCACTCTGGCTTTGGAAAAGCAGCTGGAACTTCTTGCCAGATAATCT
GGAGCAACTCATGTCACTCCATGAACTGAAGATGTATTTTTGCTTGAACATTCAGTCGCTTCCAAAGCTGCCCCGATCTC
TTGAGGAGTTTGGATTGGGGGCCTGCGATGACGAGTTCATGAGGTCTTGCAAAACAATTGGGCATCCAAACTGGCACAAG
ATCCAGCATATTCCTAGAGTAACAATTGCTTTGGAATCTACTCATTCTCCCCATGGTAGCAGCAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7413.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis