Browse Element(s) Details


OsAffx.31474.1.S1_at

Description tigr:9639.m04137
TID=OsAffx.31474.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4460011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44560Os.27110.1.A1_at11/1111+26433212..26440078Protein kinase domain containing protein, expressed
LOC_Os11g44570OsAffx.7412.1.S1_at11/1111+26442992..26444385hypothetical protein
LOC_Os11g44580OsAffx.7413.1.S1_at11/1111+26446344..26448788NB-ARC domain containing protein, expressed
LOC_Os11g44590Os.50949.1.S1_at1/1111+26453294..26456554retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g44600OsAffx.31474.1.S1_at11/1111+26460730..26461576hypothetical protein
LOC_Os11g44610NANA11+26464864..26470718retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g44619Os.54966.1.S1_at1/1111+26474477..26474883NA
LOC_Os11g44630OsAffx.31475.1.S1_at11/1111+26476299..26478897hypothetical protein
LOC_Os11g44640NANA11+26483928..26485496retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31474.1.S1_at--1050--851Chr11:26460770..26460794 (25 bp)
ATGGCCCCGTCGTGGTGGTGCCTCC
LOC_Os11g44600
OsAffx.31474.1.S1_at--880--9871Chr11:26460802..26460826 (25 bp)
TACAGGCGGCGCCTGGAGATCATCG
LOC_Os11g44600
OsAffx.31474.1.S1_at--1160--8531Chr11:26460815..26460839 (25 bp)
TGGAGATCATCGATCTTCCCCAGGG
LOC_Os11g44600
OsAffx.31474.1.S1_at--23--6051Chr11:26460817..26460841 (25 bp)
GAGATCATCGATCTTCCCCAGGGAG
LOC_Os11g44600
OsAffx.31474.1.S1_at--1104--1271Chr11:26460818..26460842 (25 bp)
AGATCATCGATCTTCCCCAGGGAGC
LOC_Os11g44600
OsAffx.31474.1.S1_at--885--6431Chr11:26460819..26460843 (25 bp)
GATCATCGATCTTCCCCAGGGAGCT
LOC_Os11g44600
OsAffx.31474.1.S1_at--1040--5591Chr11:26460852..26460876 (25 bp)
GACAACTCCAACTCCGGGGAAGTGG
LOC_Os11g44600
OsAffx.31474.1.S1_at--537--2551Chr11:26460861..26460885 (25 bp)
AACTCCGGGGAAGTGGCAGCTGCCT
LOC_Os11g44600
OsAffx.31474.1.S1_at--863--1591Chr11:26460878..26460902 (25 bp)
AGCTGCCTCGGGTGCCCATAGCTTT
LOC_Os11g44600
OsAffx.31474.1.S1_at--591--4291Chr11:26460883..26460907 (25 bp)
CCTCGGGTGCCCATAGCTTTCATTG
LOC_Os11g44600
OsAffx.31474.1.S1_at--598--4551Chr11:26460891..26460915 (25 bp)
GCCCATAGCTTTCATTGCCCTCTAC
LOC_Os11g44600
Target Sequence 
ATGGCCCCGTCGTGGTGGTGCCTCCCCCACCGTACAGGCGGCGCCTGGAGATCATCGATCTTCCCCAGGGAGCTGCTGCT
CCGACAACTCCAACTCCGGGGAAGTGGCAGCTGCCTCGGGTGCCCATAGCTTTCATTGCCCTCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31474.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis