Browse Element(s) Details


OsAffx.7412.1.S1_at

Description tigr:9639.m04134
TID=OsAffx.7412.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4457011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44520OsAffx.7410.1.S1_at11/1111+26416909..26418345hypothetical protein
LOC_Os11g44530NANA11+26418728..26424578retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g44540OsAffx.32032.4.S1_s_at11/1111+26425652..26426303hypothetical protein
LOC_Os11g44550OsAffx.7411.1.S1_at11/1111+26427362..26428630Protein kinase domain containing protein
LOC_Os11g44560Os.27110.1.A1_at11/1111+26433212..26440078Protein kinase domain containing protein, expressed
LOC_Os11g44570OsAffx.7412.1.S1_at11/1111+26442992..26444385hypothetical protein
LOC_Os11g44580OsAffx.7413.1.S1_at11/1111+26446344..26448788NB-ARC domain containing protein, expressed
LOC_Os11g44590Os.50949.1.S1_at1/1111+26453294..26456554retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g44600OsAffx.31474.1.S1_at11/1111+26460730..26461576hypothetical protein
LOC_Os11g44610NANA11+26464864..26470718retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7412.1.S1_at--854--10451Chr11:26443808..26443832 (25 bp)
TTACCGTTAAGTCCGGCACAGCTAA
LOC_Os11g44570
OsAffx.7412.1.S1_at--522--1331Chr11:26443846..26443870 (25 bp)
AGAGTGACCGACATGGCACCTGTTA
LOC_Os11g44570
OsAffx.7412.1.S1_at--931--1211Chr11:26443895..26443919 (25 bp)
AGTTCACCATGAGGTTTGGCACCGC
LOC_Os11g44570
OsAffx.7412.1.S1_at--1162--10231Chr11:26443909..26443933 (25 bp)
TTTGGCACCGCTACACGTGGCAATA
LOC_Os11g44570
OsAffx.7412.1.S1_at--102--6071Chr11:26443937..26443961 (25 bp)
GAGTGACTAACGTGGCACCGGTTGT
LOC_Os11g44570
OsAffx.7412.1.S1_at--776--2751Chr11:26444019..26444043 (25 bp)
AAGAGTAACCGACGTAGCACCTTCT
LOC_Os11g44570
OsAffx.7412.1.S1_at--869--1111Chr11:26444106..26444130 (25 bp)
AGTGACCAACGTGGCAGCTATTGCA
LOC_Os11g44570
OsAffx.7412.1.S1_at--5--951Chr11:26444158..26444182 (25 bp)
AGGAACGGTGCCACTAGCATCGCAA
LOC_Os11g44570
OsAffx.7412.1.S1_at--310--6671Chr11:26444187..26444211 (25 bp)
GTTGCAGGAGCCACCATCAAACGGG
LOC_Os11g44570
OsAffx.7412.1.S1_at--390--6931Chr11:26444211..26444235 (25 bp)
GTATGGCTATTGTCCGTATGCTGAG
LOC_Os11g44570
OsAffx.7412.1.S1_at--1150--311Chr11:26444264..26444288 (25 bp)
ATACTACCGGTGGTGGCCCATTCGA
LOC_Os11g44570
Target Sequence 
TTACCGTTAAGTCCGGCACAGCTAAACGCGGCAATGCAAGAGTGACCGACATGGCACCTGTTATAGCCTCCGACTCCGAC
AAAGATAAGTTCACCATGAGGTTTGGCACCGCTACACGTGGCAATACAGGAGTGACTAACGTGGCACCGGTTGTAGCCTC
CAACAGGAACAAGTTCACCGTCAGGCCCGATGCCGCTACACGTGGCAATGCAAGAGTAACCGACGTAGCACCTTCTGCAG
CCTCAAACAAGGACAAGTTCACAGTCAGGTCCAGCGGTGCTACGCGTGACAATGCAAGAGTGACCAACGTGGCAGCTATT
GCAGGCTCCAACAAGAATCAGTTTACCTTCAGGAACGGTGCCACTAGCATCGCAACCTTGTTGCAGGAGCCACCATCAAA
CGGGTATGGCTATTGTCCGTATGCTGAGGGGCTCACCACCGGTGAAAGCTACCGCGATACTACCGGTGGTGGCCCATTCG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7412.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis