Browse Element(s) Details


OsAffx.31475.1.S1_at

Description tigr:9639.m04140
TID=OsAffx.31475.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=gene_id:K19B1.18
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4463011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44590Os.50949.1.S1_at1/1111+26453294..26456554retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g44600OsAffx.31474.1.S1_at11/1111+26460730..26461576hypothetical protein
LOC_Os11g44610NANA11+26464864..26470718retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g44619Os.54966.1.S1_at1/1111+26474477..26474883NA
LOC_Os11g44630OsAffx.31475.1.S1_at11/1111+26476299..26478897hypothetical protein
LOC_Os11g44640NANA11+26483928..26485496retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44650OsAffx.31476.1.S1_at11/1111+26492947..26494218hypothetical protein
LOC_Os11g44660OsAffx.19373.1.S1_at11/1111+26500722..26502889Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31475.1.S1_at--340--6271Chr11:26477152..26477176 (25 bp)
GATGTGATCTTCTTCAATTGCGTAC
LOC_Os11g44630
OsAffx.31475.1.S1_at--236--6011Chr11:26476933..26476957 (25 bp)
GAGAGCATTCCATTTGACTACATAA
LOC_Os11g44630
OsAffx.31475.1.S1_at--395--5371Chr11:26476858..26476882 (25 bp)
GAAGACCTATCTTTGTCAATGCAAG
LOC_Os11g44630
OsAffx.31475.1.S1_at--815--4171Chr11:26476821..26476845 (25 bp)
CGCCAAATCCTTCTAATCACAATGC
LOC_Os11g44630
OsAffx.31475.1.S1_at--449--9671Chr11:26476709..26476730 (22 bp)
TCAAGTCAATAATTTTATCCCCGGG
LOC_Os11g44630
OsAffx.31475.1.S1_at--1032--4891Chr11:26476685..26476709 (25 bp)
GCTTACTCACGTCTCTCAAACATGT
LOC_Os11g44630
OsAffx.31475.1.S1_at--324--5531Chr11:26476651..26476675 (25 bp)
GAAAACTGCAACACTGCTGCACGTA
LOC_Os11g44630
OsAffx.31475.1.S1_at--717--9111Chr11:26476637..26476661 (25 bp)
TGCTGCACGTATTCCAGTTCCAGGA
LOC_Os11g44630
OsAffx.31475.1.S1_at--469--571Chr11:26476599..26476623 (25 bp)
ATCCTTTGCTTGCTGACTCTGAGAA
LOC_Os11g44630
OsAffx.31475.1.S1_at--1056--7611Chr11:26476408..26476432 (25 bp)
GGGAACCATTTGTACCAATGCAAGA
LOC_Os11g44630
OsAffx.31475.1.S1_at--627--651Chr11:26476351..26476375 (25 bp)
ATGCAGCGCATCAACAAGGTCACAG
LOC_Os11g44630
Target Sequence 
GATGTGATCTTCTTCAATTGCGTACATGATATTGTGGGAGCAGAATTTAATGGCAAGTACACTGCAAAGGAGAATTTCAA
TCGATATCAAAAGGCCATAGTAGATAGTCAGAGAAAGGAAGCATACAATGCATTAGAGAGCATTCCATTTGACTACATAA
TGAATGAAAATGGCGCCCCTACTAAAATTTCCCCTAATAGAAATGTTTCTGAAGACCTATCTTTGTCAATGCAAGACGCA
GCACCACCGCCAAATCCTTCTAATCACAATGCAGCATATCAAGTCAATAATTTTATCCCCGGGCTTACTCACGTCTCTCA
AACATGTCCTTCACTTGAAAACTGCAACACTGCTGCACGTATTCCAGTTCCAGGAGGTGGCGGATCAAATCCTTTGCTTG
CTGACTCTGAGAATGACCTATCTGTCAGTGATGGTGTTCATGGGGAACCATTTGTACCAATGCAAGAAGCAGAACAACCA
CCAAATCATTCTGATTACAATGCAGCGCATCAACAAGGTCACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31475.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis