Browse Element(s) Details


OsAffx.31476.1.S1_at

Description tigr:9639.m04142
TID=OsAffx.31476.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4465011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44610NANA11+26464864..26470718retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g44619Os.54966.1.S1_at1/1111+26474477..26474883NA
LOC_Os11g44630OsAffx.31475.1.S1_at11/1111+26476299..26478897hypothetical protein
LOC_Os11g44640NANA11+26483928..26485496retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44650OsAffx.31476.1.S1_at11/1111+26492947..26494218hypothetical protein
LOC_Os11g44660OsAffx.19373.1.S1_at11/1111+26500722..26502889Protein kinase domain containing protein, expressed
LOC_Os11g44670NANA11+26504424..26507680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g44680Os.52661.1.S1_at9/1111+26508551..26514533expressed protein
LOC_Os11g44690OsAffx.31477.1.S1_at11/1111+26517623..26520782Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31476.1.S1_at--50--5131Chr11:26493678..26493702 (25 bp)
GCACAGTGAGGCATTGTCTGCGACT
LOC_Os11g44650
OsAffx.31476.1.S1_at--467--2671Chr11:26493715..26493739 (25 bp)
AAGCGTGCCATTGGCCAACCATCAA
LOC_Os11g44650
OsAffx.31476.1.S1_at--471--4111Chr11:26493785..26493809 (25 bp)
CGCAATCCACTGTCATCGAACTTAG
LOC_Os11g44650
OsAffx.31476.1.S1_at--201--9051Chr11:26493821..26493845 (25 bp)
TGCAGACACCTGCAACAGTTGCCAC
LOC_Os11g44650
OsAffx.31476.1.S1_at--329--10691Chr11:26493839..26493863 (25 bp)
TTGCCACCGGCCTTGGCGAGAAGTG
LOC_Os11g44650
OsAffx.31476.1.S1_at--121--3431Chr11:26493879..26493903 (25 bp)
CAGAGGAGGCAAGCGCTACGGCAAC
LOC_Os11g44650
OsAffx.31476.1.S1_at--848--6031Chr11:26493970..26493994 (25 bp)
GAGATGCCCGACAGCTTCGAATGTG
LOC_Os11g44650
OsAffx.31476.1.S1_at--781--3331Chr11:26494032..26494056 (25 bp)
CACGCAGGGCAGTGTTGGTATTTCT
LOC_Os11g44650
OsAffx.31476.1.S1_at--417--7051Chr11:26494070..26494094 (25 bp)
GTAATACCATTGTTGCACTTCCCAT
LOC_Os11g44650
OsAffx.31476.1.S1_at--993--5091Chr11:26494084..26494108 (25 bp)
GCACTTCCCATTAGAGTTTCCAAGG
LOC_Os11g44650
OsAffx.31476.1.S1_at--351--3211Chr11:26494119..26494143 (25 bp)
CAAGGAACGTGTGTGTATCATCAAC
LOC_Os11g44650
Target Sequence 
GCACAGTGAGGCATTGTCTGCGACTGAAGTCGGCAACAAGCGTGCCATTGGCCAACCATCAAGGTCGAGGACGACCACCG
GCACGTCGAACAAGACCCCGTCAGGCACGCAATCCACTGTCATCGAACTTAGTGACAGAGGTGTGCAGACACCTGCAACA
GTTGCCACCGGCCTTGGCGAGAAGTGGGCCAATGGTCTCGGCAGAGGAGGCAAGCGCTACGGCAACGGCGGCGGCAGCGA
TTGCGGTGGGAGAGACCACGGCGCATCGGCTGCCGTCACCGGCCTCGGCGAGGAGATGCCCGACAGCTTCGAATGTGGAA
GGGAGAGCGATGGCGGTGTTGATGGCGGCAACAACACGCAGGGCAGTGTTGGTATTTCTTACAATCACGCACGTAATACC
ATTGTTGCACTTCCCATTAGAGTTTCCAAGGGTATCGAACACAAGGAACGTGTGTGTATCATCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31476.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis