Browse Element(s) Details


Os.45946.1.S1_at

Description gb:NM_186392.1
DB_XREF= gi:34899869
GEN=OJ1714_H10.17
TID=Os.45946.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45946 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1714_H10.17 (OJ1714_H10.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) OJ1714_H10.17 (OJ1714_H10.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g066107/11ubiquitin-specific protease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06550Os.21592.1.S1_at10/117+3181642..3185545expressed protein
LOC_Os07g06550Os.12752.3.S1_x_at7/117+3181642..3185545expressed protein
LOC_Os07g06560NANA7+3187136..3187684Zinc finger, C3HC4 type family protein
LOC_Os07g06570OsAffx.16125.1.S1_at11/117+3188614..3190371Protein kinase domain containing protein
LOC_Os07g06580NANA7+3193564..3194568hypothetical protein
LOC_Os07g06590Os.12274.1.S1_at10/117+3197066..3200109ML domain protein, putative, expressed
LOC_Os07g06600Os.18418.1.S1_at11/117+3201368..3202492Glutaredoxin family protein, expressed
LOC_Os07g06610OsAffx.32032.4.S1_s_at11/117+3205422..3212293ubiquitin-specific protease, putative, expressed
LOC_Os07g06610Os.45946.1.S1_at7/117+3205422..3212293ubiquitin-specific protease, putative, expressed
LOC_Os07g06620Os.50378.1.S1_at11/117+3219894..3227551YABBY protein, putative, expressed
LOC_Os07g06620Os.33534.1.S1_s_at11/117+3219894..3227551YABBY protein, putative, expressed
LOC_Os07g06620OsAffx.22476.1.S1_x_at9/117+3219894..3227551YABBY protein, putative, expressed
LOC_Os07g06620OsAffx.28309.1.S1_at7/117+3219894..3227551YABBY protein, putative, expressed
LOC_Os07g06630OsAffx.11218.1.S1_at8/117+3229092..3235296retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0004221molecular_functionubiquitin thiolesterase activity
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45946.1.S1_at--618--211Chr07:3211644..3211668 (25 bp)
ATTTGTGGATTTCCCCATTAGTGAT
LOC_Os07g06610
Os.45946.1.S1_at--413--9291Chr07:3211655..3211679 (25 bp)
TCCCCATTAGTGATTTGGATCTGTC
LOC_Os07g06610
Os.45946.1.S1_at--932--8551Chr07:3211670..3211694 (25 bp)
TGGATCTGTCATCATATATCATTGA
LOC_Os07g06610
Os.45946.1.S1_at--1003--2213Chr12:21310081..21310105 (25 bp)
ACAAGAGTGAACTATCAGACTGCCA
NONE
Os.45946.1.S1_at--47--3831Chr07:3211713..3211737 (25 bp)
CTGCCACTATCGCTTGTATGCTATT
LOC_Os07g06610
Os.45946.1.S1_at--252--6151Chr07:3211760..3211784 (25 bp)
GAGGTGGACACTACACCGCCAGCAT
LOC_Os07g06610
Os.45946.1.S1_at--1066--1791Chr07:3211774..3211893 (25 bp)
ACCGCCAGCATCTACCATGAAGAAG
LOC_Os07g06610
Os.45946.1.S1_at--105--451Chr07:3212619..3212643 (25 bp)
ATCTTTTCTGCCTTGACATACCACA
NONE
Os.45946.1.S1_at--533--5671Chr07:3212633..3212657 (25 bp)
GACATACCACAGGACCAGACCAGGT
NONE
Os.45946.1.S1_at--586--4891Chr07:3212673..3212697 (25 bp)
GCTTTATGTGCAACAAGGTGTCCTG
NONE
Os.45946.1.S1_at--312--7751Chr07:3212689..3212713 (25 bp)
GGTGTCCTGGACAAACTGTGTTCTG
NONE
Target Sequence 
ATTTGTGGATTTCCCCATTAGTGATTTGGATCTGTCATCATATATCATTGACAAGAGTGAACTATCAGACTGCCACTATC
GCTTGTATGCTATTAGCAATCACTATGGAAATATGGGAGGTGGACACTACACCGCCAGCATCTACCATGAAGAAGGGAAG
GGATGGTATAAGTTTGATGATGAGTGCGNNANNNNNNNNANNNNNNNCNNTNNTTNNNNNCNNNCTNCNNANNTNNNNTG
TTTGACAAATAACAGAAGATTATTGCTGTCCTCAGTGCTGTTTGGCCTGATTGCCTTGGACAAATATTCTGACATATCTC
AACAACATCTTTTCTGCCTTGACATACCACAGGACCAGACCAGGTTGGATGGGCATCAGAGCTTTATGTGCAACAAGGTG
TCCTGGACAAACTGTGTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis