Browse Element(s) Details


Os.5526.1.S1_at

Description gb:AK107811.1
DB_XREF= gi:32993020
TID=Os.5526.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5526 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-F01, full insert sequence.
FL= gb:AK107811.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g065307/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06490Os.54677.1.S1_at11/117+3148558..3150943expressed protein
LOC_Os07g06500Os.18422.1.A1_at11/117+3151881..3155409F-box domain containing protein, expressed
LOC_Os07g06500Os.20860.1.S1_at1/117+3151881..3155409F-box domain containing protein, expressed
LOC_Os07g06510Os.20602.2.S1_x_at11/117+3156193..3158373hAT family dimerisation domain containing protein
LOC_Os07g06530OsAffx.28308.1.S1_at11/117+3167547..3170311hypothetical protein
LOC_Os07g06530Os.5526.1.S1_at7/117+3167547..3170311hypothetical protein
LOC_Os07g06530OsAffx.28308.2.S1_x_at1/117+3167547..3170311hypothetical protein
LOC_Os07g06540OsAffx.22478.1.S1_at11/117+3178646..3179224Zinc finger, C3HC4 type family protein
LOC_Os07g06550Os.21592.1.S1_at10/117+3181642..3185545expressed protein
LOC_Os07g06550Os.12752.3.S1_x_at7/117+3181642..3185545expressed protein
LOC_Os07g06560NANA7+3187136..3187684Zinc finger, C3HC4 type family protein
LOC_Os07g06570OsAffx.16125.1.S1_at11/117+3188614..3190371Protein kinase domain containing protein
LOC_Os07g06580NANA7+3193564..3194568hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5526.1.S1_at--548--4151NONE
CGCCATATTATCTCCGATTGCACGT
NONE
Os.5526.1.S1_at--941--9231Chr07:3167515..3167539 (25 bp)
TCCTTCCTAGGATAGTGCTGTGCTT
NONE
Os.5526.1.S1_at--140--7951NONE
GGATATTTCGATAGGCTCCTTGAAA
NONE
Os.5526.1.S1_at--284--3173Chr07:3168280..3168304 (25 bp)
AATTGACTGGTAGGATGTTCCATAG
LOC_Os07g06530
Os.5526.1.S1_at--389--1532Chr07:3168320..3168344 (25 bp)
AGCAGTTTTCTGATGGTGTCATTTA
LOC_Os07g06530
Os.5526.1.S1_at--209--4391Chr07:3168359..3168383 (25 bp)
CCAATGAATGGTCTACTGATGTGTC
LOC_Os07g06530
Os.5526.1.S1_at--899--7931Chr07:3168409..3168433 (25 bp)
GGATTTTGATGTGCATTTGGACTAA
LOC_Os07g06530
Os.5526.1.S1_at--84--3151Chr07:3168432..3168456 (25 bp)
AATTAATCATCCAAGTTGTCGGCAG
LOC_Os07g06530
Os.5526.1.S1_at--730--4371Chr07:3168442..3168466 (25 bp)
CCAAGTTGTCGGCAGATGGATTCAA
LOC_Os07g06530
Os.5526.1.S1_at--397--6251NONE
GATGGATTCAACTTGCGGAGTGTAA
NONE
Os.5526.1.S1_at--730--2251Chr07:3168519..3168543 (25 bp)
AAATATCTCCTGTACTTTTGGCTGG
LOC_Os07g06530
Target Sequence 
CGCCATATTATCTCCGATTGCACGTGCACCTCCTCCTTCCTGGGACCTTGTACCCTCTCCTTCCTAGGATAGTGCTGTGC
TTCAGGAAGATGGCAAAGAAGAAGAACCCAATTGTCTTTATGGATATTTCGATAGGCTCCTTGAAATTGACTGGTAGGAT
GTTCCATAGAATTTTTTTGATGGTAGCAGTTTTCTGATGGTGTCATTTAGACTAATTAACCATCCAATGAATGGTCTACT
GATGTGTCATTTTGGGGATGTTGGGAGAAGTTTGGATTTTGATGTGCATTTGGACTAATTAATCATCCAAGTTGTCGGCA
GATGGATTCAACTTGCGGAGTGTAAGGGAATGGAATCAGAACAATCTTCTTATTATACTGTATAAATATCTCCTGTACTT
TTGGCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5526.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis