Browse Element(s) Details


Os.17823.1.S1_a_at

Description gb:AK065685.1
DB_XREF= gi:32975703
TID=Os.17823.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17823 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1714_H10.22 (OJ1714_H10.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013040D10, full insert sequence.
FL= gb:AK065685.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0664411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06620Os.50378.1.S1_at11/117+3219894..3227551YABBY protein, putative, expressed
LOC_Os07g06620Os.33534.1.S1_s_at11/117+3219894..3227551YABBY protein, putative, expressed
LOC_Os07g06620OsAffx.22476.1.S1_x_at9/117+3219894..3227551YABBY protein, putative, expressed
LOC_Os07g06620OsAffx.28309.1.S1_at7/117+3219894..3227551YABBY protein, putative, expressed
LOC_Os07g06630OsAffx.11218.1.S1_at8/117+3229092..3235296retrotransposon protein, putative, unclassified
LOC_Os07g06644Os.17823.1.S1_a_at11/117+3240246..3242994expressed protein
LOC_Os07g06660Os.11753.1.S1_at11/117+3243036..3245608lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g06660Os.11753.2.S1_at10/117+3243036..3245608lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g06670Os.7147.1.S1_at7/117+3249400..3253581F-box domain containing protein, expressed
LOC_Os07g06680Os.27550.1.S1_at10/117+3256608..3260416beta-Ig-H3 domain-containing protein, putative, expressed
LOC_Os07g06700OsAffx.22473.1.S1_at10/117+3263653..3264775hypothetical protein
LOC_Os07g06700OsAffx.22473.1.S1_x_at10/117+3263653..3264775hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17823.1.S1_a_at--610--4731Chr07:3242244..3242268 (25 bp)
GCTGTTATTCAAGACGGCGGTGCAA
LOC_Os07g06644
Os.17823.1.S1_a_at--898--6011Chr07:3242296..3242320 (25 bp)
GAGAGATCAGCTTCCGCACAAATTC
LOC_Os07g06644
Os.17823.1.S1_a_at--352--3151Chr07:3242316..3242340 (25 bp)
AATTCAACCTACCAGTTCATCGGTG
LOC_Os07g06644
Os.17823.1.S1_a_at--447--10531Chr07:3242331..3242355 (25 bp)
TTCATCGGTGAACTCCTGATCAAAC
LOC_Os07g06644
Os.17823.1.S1_a_at--762--6351Chr07:3242454..3242475 (22 bp)
GATGCCGTTTTGCAAGCACGCGTAG
LOC_Os07g06644
Os.17823.1.S1_a_at--972--4071Chr07:3242486..3242510 (25 bp)
CGACGGTATTGACCTGAACCTCTAC
LOC_Os07g06644
Os.17823.1.S1_a_at--983--3051Chr07:3242515..3242539 (25 bp)
AATCTTTGCTCATCCGACGACAATA
LOC_Os07g06644
Os.17823.1.S1_a_at--986--10111Chr07:3242538..3242562 (25 bp)
TATGAAGCTCAACTACGGTCCAGGA
LOC_Os07g06644
Os.17823.1.S1_a_at--364--6011Chr07:3242561..3242585 (25 bp)
GAGAGCATGATCCAAAGCCCTGTGA
LOC_Os07g06644
Os.17823.1.S1_a_at--618--3191Chr07:3242600..3242624 (25 bp)
CAATGATCTGTCTGCTTGACTGCAA
LOC_Os07g06644
Os.17823.1.S1_a_at--48--2251Chr07:3242739..3242763 (25 bp)
AAATTGTCTGGTTGTTTTCATGCCT
LOC_Os07g06644
Target Sequence 
GCTGTTATTCAAGACGGCGGTGCAAGCCTCAAGGTAGACACTCAGAACTTGAGAGAGATCAGCTTCCGCACAAATTCAAC
CTACCAGTTCATCGGTGAACTCCTGATCAAACCAGATAACGATGCCGTTTTGCAAGCACGCGTAGGTAGGAATGTCGACG
GTATTGACCTGAACCTCTACCAGCAATCTTTGCTCATCCGACGACAATATGAAGCTCAACTACGGTCCAGGAGAGCATGA
TCCAAAGCCCTGTGAATCAGGAAAATGTTCAATGATCTGTCTGCTTGACTGCAATGGTTCCCAGTTGCAAAGGGGAGCAG
AGTATCATAACTAAATCTCTGAAGGCAGATCATGTCAGTAGGACTAGGACCACCATAAACATTGGTGGTGAGAATTGAGA
TGTAGAGCAAATTGTCTGGTTGTTTTCATGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17823.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis