Browse Element(s) Details


Os.17690.1.S1_at

Description gb:AK061530.1
DB_XREF= gi:32971548
TID=Os.17690.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.17690 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1714_H10.48 (OJ1714_H10.48), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-310-E02, full insert sequence.
FL= gb:AK106008.1 gb:AK061530.1 gb:AK106142.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0684011/11PrMC3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06800OsAffx.16129.1.S1_at10/117+3314786..33164703-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os07g06810OsAffx.22471.1.S1_x_at11/117+3317638..3320290hypothetical protein
LOC_Os07g06820Os.17949.1.S1_a_at11/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820Os.31112.3.S1_x_at10/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820Os.31112.3.S1_at10/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820OsAffx.18607.1.S1_x_at3/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06830Os.16540.1.S1_at11/117+3331186..3332575alpha/beta hydrolase fold family protein, putative, expressed
LOC_Os07g06840Os.17690.1.S1_at11/117+3340497..3341896PrMC3, putative, expressed
LOC_Os07g06850Os.27810.1.S1_at11/117+3343080..3344851PrMC3, putative, expressed
LOC_Os07g06860Os.28983.1.S1_at11/117+3349432..3350972PrMC3, putative, expressed
LOC_Os07g06870OsAffx.28315.1.S1_at11/117+3356244..3357843hypothetical protein
LOC_Os07g06880Os.18428.1.S1_at11/117+3358301..3359859PrMC3, putative, expressed
LOC_Os07g06890Os.47952.1.A1_at3/117+3361792..3368287FAD linked oxidases, C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17690.1.S1_at--389--1931Chr07:3340995..3341019 (25 bp)
ACGGCGACCTCCTCAGGGACAAGAA
LOC_Os07g06840
Os.17690.1.S1_at--847--4631Chr07:3340897..3340921 (25 bp)
GCGTTCTTCGGCGTGAAGCCAATGT
LOC_Os07g06840
Os.17690.1.S1_at--748--9411Chr07:3340854..3340878 (25 bp)
TCGTCGAGGTCATCAGGCGGTTCAT
LOC_Os07g06840
Os.17690.1.S1_at--265--4571Chr07:3340824..3340848 (25 bp)
GCGCCGCCGCGTAAGTGATCGTGAT
LOC_Os07g06840
Os.17690.1.S1_at--306--8831Chr07:3340809..3340833 (25 bp)
TGATCGTGATCGAGCGAACGCCGGC
LOC_Os07g06840
Os.17690.1.S1_at--470--7291Chr07:3340763..3340787 (25 bp)
GTGCGCCACGTGTTCGTAGGCTTAT
LOC_Os07g06840
Os.17690.1.S1_at--961--6911Chr07:3340748..3340772 (25 bp)
GTAGGCTTATTCCACAGATGCGACA
LOC_Os07g06840
Os.17690.1.S1_at--876--3431Chr07:3340734..3340758 (25 bp)
CAGATGCGACATGGTGGCAGGCACT
LOC_Os07g06840
Os.17690.1.S1_at--58--8251Chr07:3340715..3340739 (25 bp)
GGCACTGTGTCCTTGCAACAATAAT
LOC_Os07g06840
Os.17690.1.S1_at--137--3111Chr07:3340580..3340604 (25 bp)
AATAGTGGTCGCAGTTTATATGGCT
LOC_Os07g06840
Os.17690.1.S1_at--434--2871Chr07:3340548..3340572 (25 bp)
AAGTGTGACAGTGACCGTAAGCAGA
LOC_Os07g06840
Target Sequence 
ACGGCGACCTCCTCAGGGACAAGAACGTCGAGTACGCGGAGCGGATGAAGGCGATGGGGAAGGACGTGGAGCTGGTGGTG
TTCGCCGGCGAGGAGCACGCGTTCTTCGGCGTGAAGCCAATGTCGGCGGCCACCGGCGAGCTCGTCGAGGTCATCAGGCG
GTTCATCGCCGGCGCCGCCGCGTAAGTGATCGTGATCGAGCGAACGCCGGCGACGGCGAGGTGGTTTGCCTCGTGCGCCA
CGTGTTCGTAGGCTTATTCCACAGATGCGACATGGTGGCAGGCACTGTGTCCTTGCAACAATAATTGAGACAAGCTTAAT
TACTTCGTACTACATTTGTGTTTTTTTTTTTTGTGGTTACAAATTGGGCACAATGGCAAGCAACAAAGGTCGACAAATTT
ATGTCATTGTTGTGAAATAGTGGTCGCAGTTTATATGGCTGCGAAGGAAGTGTGACAGTGACCGTAAGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17690.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis