Browse Element(s) Details


Os.17841.1.S1_at

Description gb:AK059224.1
DB_XREF= gi:32969242
TID=Os.17841.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17841 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0428D12.13 (P0428D12.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-D06, full insert sequence.
FL= gb:AK059224.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0694011/11Valyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06890Os.47952.1.A1_at3/117+3361792..3368287FAD linked oxidases, C-terminal domain containing protein, expressed
LOC_Os07g06900OsAffx.28316.1.S1_at11/117+3370897..3373090F-box domain containing protein
LOC_Os07g06910OsAffx.21754.1.S1_x_at1/117+3376409..3377539retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g06920NANA7+3378934..3382385retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g06930OsAffx.22470.1.S1_at11/117+3384720..3385371hypothetical protein
LOC_Os07g06940Os.17841.1.S1_at11/117+3393161..3398476Valyl-tRNA synthetase, putative, expressed
LOC_Os07g06940Os.17841.2.S1_x_at9/117+3393161..3398476Valyl-tRNA synthetase, putative, expressed
LOC_Os07g06950Os.6600.1.S1_at11/117+3410019..3422806Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17841.1.S1_at--588--5931Chr07:3397869..3397893 (25 bp)
GATGTTTCTGAGGAAGTTAAGCGGC
LOC_Os07g06940
Os.17841.1.S1_at--1069--731Chr07:3397870..3397894 (25 bp)
ATGTTTCTGAGGAAGTTAAGCGGCT
LOC_Os07g06940
Os.17841.1.S1_at--747--8771Chr07:3397871..3397895 (25 bp)
TGTTTCTGAGGAAGTTAAGCGGCTG
LOC_Os07g06940
Os.17841.1.S1_at--416--10291Chr07:3397873..3397897 (25 bp)
TTTCTGAGGAAGTTAAGCGGCTGTC
LOC_Os07g06940
Os.17841.1.S1_at--994--10591Chr07:3397874..3397898 (25 bp)
TTCTGAGGAAGTTAAGCGGCTGTCA
LOC_Os07g06940
Os.17841.1.S1_at--936--9451Chr07:3397875..3397899 (25 bp)
TCTGAGGAAGTTAAGCGGCTGTCAA
LOC_Os07g06940
Os.17841.1.S1_at--1047--3851Chr07:3397876..3397900 (25 bp)
CTGAGGAAGTTAAGCGGCTGTCAAA
LOC_Os07g06940
Os.17841.1.S1_at--2--8871Chr07:3397877..3397901 (25 bp)
TGAGGAAGTTAAGCGGCTGTCAAAG
LOC_Os07g06940
Os.17841.1.S1_at--625--5331Chr07:3397881..3397905 (25 bp)
GAAGTTAAGCGGCTGTCAAAGCGCC
LOC_Os07g06940
Os.17841.1.S1_at--890--2811Chr07:3397882..3397906 (25 bp)
AAGTTAAGCGGCTGTCAAAGCGCCT
LOC_Os07g06940
Os.17841.1.S1_at--1108--1191Chr07:3397883..3397907 (25 bp)
AGTTAAGCGGCTGTCAAAGCGCCTC
LOC_Os07g06940
Target Sequence 
GATGTTTCTGAGGAAGTTAAGCGGCTGTCAAAGCGCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17841.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis