Browse Element(s) Details


Os.28059.1.S1_a_at

Description gb:AK099351.1
DB_XREF= gi:32984560
TID=Os.28059.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.28059 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0039H02.3 (P0039H02.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030B17, full insert sequence.
FL= gb:AK073327.1 gb:AK099351.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0700011/11Syntaxin 132, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06950Os.6600.1.S1_at11/117+3410019..3422806Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g06960Os.44434.1.S1_at9/117+3424580..3426767pentatricopeptide, putative
LOC_Os07g06970Os.49794.1.S1_at11/117+3427782..3433034HEN1, putative, expressed
LOC_Os07g06980Os.21399.1.S1_a_at11/117+3434310..3443018histone deacetylase HDA110 isoform 1, putative, expressed
LOC_Os07g06990Os.28059.5.A1_x_at11/117+3443285..3444565hypothetical protein
LOC_Os07g07000Os.28059.1.S1_a_at11/117+3444643..3448633Syntaxin 132, putative, expressed
LOC_Os07g07000OsAffx.31589.1.S1_s_at1/117+3444643..3448633Syntaxin 132, putative, expressed
LOC_Os07g07010OsAffx.28317.1.S1_at11/117+3452188..3455354ALG6, ALG8 glycosyltransferase family protein, expressed
LOC_Os07g07020Os.18373.1.S1_at11/117+3458131..3461054SOH1 family protein, expressed
LOC_Os07g07030Os.7388.1.S1_s_at11/117+3463488..3465508expressed protein
LOC_Os07g07030Os.7388.2.S1_at11/117+3463488..3465508expressed protein
LOC_Os07g07030Os.7388.2.S1_x_at11/117+3463488..3465508expressed protein
LOC_Os07g07040OsAffx.22469.1.S1_x_at11/117+3467731..3469935expressed protein
LOC_Os07g07040Os.12429.1.S1_at11/117+3467731..3469935expressed protein
LOC_Os07g07050Os.44431.1.S1_at11/117+3470134..3475221Aldehyde oxidase 4, putative, expressed
LOC_Os07g07050Os.44431.2.S1_x_at11/117+3470134..3475221Aldehyde oxidase 4, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0006944biological_processmembrane fusion
GO:0005886cellular_componentplasma membrane
GO:0005486molecular_functiont-SNARE activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28059.1.S1_a_at--1026--6211Chr07:3445412..3445557 (25 bp)
GAGGCCAAATACTGGACACTGTTGC
LOC_Os07g07000
Os.28059.1.S1_a_at--405--9051Chr07:3445390..3445414 (25 bp)
TGCAGAGATACAGGAACGTCACGAT
LOC_Os07g07000
Os.28059.1.S1_a_at--122--8171Chr07:3445378..3445402 (25 bp)
GGAACGTCACGATGCTGTAAGAGAT
LOC_Os07g07000
Os.28059.1.S1_a_at--80--6511Chr07:3445207..3445231 (25 bp)
GATATGGCAGTTTTGGTTGATGCTC
LOC_Os07g07000
Os.28059.1.S1_a_at--149--5991Chr07:3445056..3445183 (25 bp)
GAGACACATGTTTCAAATGCTACCA
LOC_Os07g07000
Os.28059.1.S1_a_at--93--631Chr07:3445040..3445064 (25 bp)
ATGCTACCAACCACATACAACAAGG
LOC_Os07g07000
Os.28059.1.S1_a_at--656--9851Chr07:3445025..3445049 (25 bp)
TACAACAAGGCGTCAGTGCTCTACA
LOC_Os07g07000
Os.28059.1.S1_a_at--967--7111Chr07:3445014..3445038 (25 bp)
GTCAGTGCTCTACAGAACGCGAAGA
LOC_Os07g07000
Os.28059.1.S1_a_at--1156--4271Chr07:3444946..3444970 (25 bp)
CCTCCTGCTCATCATAGTGGTGATC
LOC_Os07g07000
Os.28059.1.S1_a_at--176--291Chr07:3444933..3444957 (25 bp)
ATAGTGGTGATCATTGTCGTCGCCG
LOC_Os07g07000
Os.28059.1.S1_a_at--828--9331Chr07:3444914..3444938 (25 bp)
TCGCCGTCATCCAGCCATGGAAGAA
LOC_Os07g07000
Target Sequence 
GAGGCCAAATACTGGACACTGTTGCAGAGATACAGGAACGTCACGATGCTGTAAGAGATCTAGAGAGGAAGCTTCTGGAG
TTNCAGCAGATATTCATGGATATGGCAGTTTTGGTTGATGCTCAAGGAGACATGATCAACAACATAGAGACACATGTTTC
AAATGCTACCAACCACATACAACAAGGCGTCAGTGCTCTACAGAACGCGAAGAAGCTCCAGAAGAACTCCAGGAAGTGGA
TGTGCTACGCCATCATCCTCCTGCTCATCATAGTGGTGATCATTGTCGTCGCCGTCATCCAGCCATGGAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28059.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis